cluster # 2722

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Schistosoma mansoni
cluster # 2722 cluster # 2722 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2722#0 length = 410 sequences # 1

consensus_2722#1 length = 377 sequences # 1

consensusID : consensus_2722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAACACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCATTAAGAAAAAGTAACGCACAAATC]

[+] EMBL CD196824             [CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAACACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCATTAAGAAAAAGTAACGCACAAATC]




>consensus_2722#0
CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAAC
ACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAAC
TGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTC
TGAACGTTACATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGAT
TATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACGCAAGGGCTGA
ACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACT
ACTAGCAAGAGTTGAACACCAACTCATTAAGAAAAAGTAACGCACAAATC

consensusID : consensus_2722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT]

[-] EMBL CD092847             [ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT]




>consensus_2722#1
ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGC
TGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACTAAAAATAAC
AATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTTGGCTAAATGGCCTTAATAAC
TCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAAC
CCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCC
ATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCACTAAGAAAAAGTAACGCA
CAAATCCAATTACTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2722#0      CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAAC 60
consensus_2722#1      ------------------------------------------------------------
                                                                                  

consensus_2722#0      ACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAAC 120
consensus_2722#1      --------------------ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAAC 40
                                          ****************************************

consensus_2722#0      TGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTC 180
consensus_2722#1      TGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTC 100
                      ************************************************************

consensus_2722#0      TGAACGTTAC------------------------------------ATCTTTAGACAGTT 204
consensus_2722#1      TGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTT 160
                      **********                                    **************

consensus_2722#0      GGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAA 264
consensus_2722#1      GGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAA 220
                      ************************************************************

consensus_2722#0      CATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTC 324
consensus_2722#1      CATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTC 280
                      ************************* **********************************

consensus_2722#0      CTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACT 384
consensus_2722#1      CTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACT 340
                      ************************************************************

consensus_2722#0      CATTAAGAAAAAGTAACGCACAAATC----------- 410
consensus_2722#1      CACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT 377
                      ** ***********************