cluster # 279

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Schistosoma mansoni
cluster # 279 cluster # 279 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_279#0 length = 375 sequences # 1

consensus_279#1 length = 361 sequences # 1

consensusID : consensus_279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTATCGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGCGGATCCCAGCCAGGT]

[+] EMBL CD131774             [GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTATCGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGCGGATCCCAGCCAGGT]




>consensus_279#0
GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTAT
CGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCT
TATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTC
GTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGAT
TGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCAT
TGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGC
GGATCCCAGCCAGGT

consensusID : consensus_279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [AGACATAGGTAGGTATCGTAATTGTGATATTCGTGTCTGTCGATTGTATCGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGCGGATCCCAGCCA]

[+] EMBL CD128013             [AGACATAGGTAGGTATCGTAATTGTGATATTCGTGTCTGTCGATTGTATCGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGCGGATCCCAGCCA]




>consensus_279#1
AGACATAGGTAGGTATCGTAATTGTGATATTCGTGTCTGTCGATTGTATCGACCTGATTA
GGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATA
TAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGT
GACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGATTGCGATCGAGT
GGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCATTGGAAACGATT
CTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGCGGATCCCAGCC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_279#0      GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTAT 60
consensus_279#1      ----------AGACATAGGTAGG-TATCGTAATTGTGATATTCGTGTCTGTCGATTGTAT 49
                               *      *** ** ************** *********************

consensus_279#0      CGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCT 120
consensus_279#1      CGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCT 109
                     **** *******************************************************

consensus_279#0      TATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTC 180
consensus_279#1      TATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTC 169
                     ************************************************************

consensus_279#0      GTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGAT 240
consensus_279#1      GTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGAT 229
                     ***************************************************** ******

consensus_279#0      TGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCAT 300
consensus_279#1      TGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCAT 289
                     ****************************************************** *****

consensus_279#0      TGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGC 360
consensus_279#1      TGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGC 349
                     ************************************************** *********

consensus_279#0      GGATCCCAGCCAGGT 375
consensus_279#1      GGATCCCAGCCA--- 361
                     ************