cluster # 281

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Schistosoma mansoni
cluster # 281 cluster # 281 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_281#0 length = 326 sequences # 1

consensus_281#1 length = 260 sequences # 1

consensusID : consensus_281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTT]

[+] EMBL CD184256             [GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTT]




>consensus_281#0
GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGT
GAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGT
ACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTG
GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG
TGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTG
TACTGACTAGACGGGAGTATAGTTTT

consensusID : consensus_281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTTAATGTTTATGGTAGTTTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA]

[+] EMBL AA756913             [TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTTAATGTTTATGGTAGTTTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA]




>consensus_281#1
TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAG
CGAGTNTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCG
GCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTG
GTTTGGCGATGGAGAGAGTGGACTGTTAATGTTTATGGTAGTTTAAGTTTATCGTAGATT
CTAGTTTATTAATAGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_281#0      GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGT 60
consensus_281#1      -----------------------------------TTTGGCGATGGAGAGAGTGGACTGT 25
                                                        ****  ***  *  ***********

consensus_281#0      GAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGT 120
consensus_281#1      GAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGT 85
                     *******************************  ******* ***** *** *********

consensus_281#0      ACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTG 180
consensus_281#1      ACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTG 145
                     ************************** * *******************************

consensus_281#0      GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG 240
consensus_281#1      GTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG 205
                     ******************* ****************************************

consensus_281#0      TGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTG 300
consensus_281#1      TTAATGTTTATGGTAGT-TTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA---- 260
                     * **    * * ** ** *  **      *      * *** ****  *  *        

consensus_281#0      TACTGACTAGACGGGAGTATAGTTTT 326
consensus_281#1      --------------------------