cluster # 2974

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Schistosoma mansoni
cluster # 2974 cluster # 2974 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2974#0 length = 351 sequences # 1

consensus_2974#1 length = 204 sequences # 1

consensusID : consensus_2974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATTTTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGAAACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACATTAAAAAAAACCAAGGGATAAATGCAGAGTAAGTAAGATAGACACACAAACAAATAAACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACACACAAACGCAAGAGAAATGGAAGGGGGGGAAATAAGGAAAGACTAGAAGAAATTCA]

[+] EMBL CD111110             [CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATTTTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGAAACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACATTAAAAAAAACCAAGGGATAAATGCAGAGTAAGTAAGATAGACACACAAACAAATAAACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACACACAAACGCAAGAGAAATGGAAGGGGGGGAAATAAGGAAAGACTAGAAGAAATTCA]




>consensus_2974#0
CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATT
TTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGA
AACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACAT
TAAAAAAAACCAAGGGATAAATGCAGAGTAAGTAAGATAGACACACAAACAAATAAACAT
ATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACACACAA
ACGCAAGAGAAATGGAAGGGGGGGAAATAAGGAAAGACTAGAAGAAATTCA

consensusID : consensus_2974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [TATAAACATTTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATAAACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACACNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATCACACATCNTCAANAC]

[-] EMBL SMRAP124             [TATAAACATTTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATAAACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACACNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATCACACATCNTCAANAC]




>consensus_2974#1
TATAAACATTTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCA
ANCNNGATAAACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGT
ATATAAACACNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAG
AAATTCATCACACATCNTCAANAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2974#0      CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATT 60
consensus_2974#1      ------------------------------------------------------------
                                                                                  

consensus_2974#0      TTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGA 120
consensus_2974#1      ------------------------------------------------------------
                                                                                  

consensus_2974#0      AACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACAT 180
consensus_2974#1      ---------------------------------------------------TATAAACAT 9
                                                                          ********

consensus_2974#0      TAAAAA--AAACCAAGGG-ATAAATGCAGAGTAAGTAAGATAGACAC-ACAAACAA-ATA 235
consensus_2974#1      TTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATA 69
                      * ** *  ***** **** ** *** *********************  *** *   ***

consensus_2974#0      AACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACA 295
consensus_2974#1      AACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACA 129
                      ************** ************************ ********************

consensus_2974#0      CACAAACGCAAGAGAAATGGAAGGGGGGG--AAATAAGGAAAGACTAGAAGAAATTCA-- 351
consensus_2974#1      CNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATC 189
                      * ** **** *******************  ********* ******* *********  

consensus_2974#0      ---------------
consensus_2974#1      ACACATCNTCAANAC 204