cluster # 2983

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Schistosoma mansoni
cluster # 2983 cluster # 2983 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2983#0 length = 554 sequences # 1

consensus_2983#1 length = 348 sequences # 1

consensusID : consensus_2983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCATCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTTATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGTCCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGGACGTTCATATTCAG]

[+] EMBL CD163000             [TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCATCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTTATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGTCCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGGACGTTCATATTCAG]




>consensus_2983#0
TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCA
TCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTT
TTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCC
GTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCA
CCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTT
TTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATC
TTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTT
ATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGT
CCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGG
ACGTTCATATTCAG

consensusID : consensus_2983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TCTGGCCGCGATCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCTCCAGGACATTGAAGTATTTCAAGGGGGGTGTAC]

[-] EMBL CD111256             [TCTGGCCGCGATCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCTCCAGGACATTGAAGTATTTCAAGGGGGGTGTAC]




>consensus_2983#1
TCTGGCCGCGATCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACA
AACACCACCTTTGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAA
TATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCG
TTTTCTCCCCACCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCAT
TCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAAC
GGACTATCATCTTCTCCAGGACATTGAAGTATTTCAAGGGGGGTGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2983#0      TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCA 60
consensus_2983#1      -------------------------------------------------TCTGGCCGCGA 11
                                                                       *** ***** *

consensus_2983#0      TCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTT 120
consensus_2983#1      TCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTT 71
                      **************** *******************************************

consensus_2983#0      TTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCC 180
consensus_2983#1      TGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCC 131
                      * **********************************************************

consensus_2983#0      GTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCA 240
consensus_2983#1      GTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCA 191
                      ************************************************************

consensus_2983#0      CCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTT 300
consensus_2983#1      CCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTT 251
                      ******************** ***************************************

consensus_2983#0      TTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATC 360
consensus_2983#1      TTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATC 311
                      ************************************************************

consensus_2983#0      TTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTT 420
consensus_2983#1      TTC------TCCAGGACAT----TGAAGTATTTCAAGGGGGGTGTAC------------- 348
                      ***      *     * **    **** ** ****      ** **              

consensus_2983#0      ATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGT 480
consensus_2983#1      ------------------------------------------------------------
                                                                                  

consensus_2983#0      CCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGG 540
consensus_2983#1      ------------------------------------------------------------
                                                                                  

consensus_2983#0      ACGTTCATATTCAG 554
consensus_2983#1      --------------