cluster # 3039

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Schistosoma mansoni
cluster # 3039 cluster # 3039 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3039#0 length = 368 sequences # 1

consensus_3039#1 length = 239 sequences # 1

consensusID : consensus_3039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATAACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCCGTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTAGTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCATTTGCCGA]

[+] EMBL CD153748             [CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATAACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCCGTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTAGTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCATTTGCCGA]




>consensus_3039#0
CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATA
ACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCC
GTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTA
GTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTG
TTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATC
TTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCA
TTTGCCGA

consensusID : consensus_3039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [AATTCAGGCAAAAAATTCCTTTCTTTAACTATCTATATTGTGTTTTTGACTGATATTAATTCGGTATTTGTTTTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT]

[-] EMBL CD112253             [AATTCAGGCAAAAAATTCCTTTCTTTAACTATCTATATTGTGTTTTTGACTGATATTAATTCGGTATTTGTTTTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT]




>consensus_3039#1
AATTCAGGCAAAAAATTCCTTTCTTTAACTATCTATATTGTGTTTTTGACTGATATTAAT
TCGGTATTTGTTTTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCT
TGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCA
TCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3039#0      CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATA 60
consensus_3039#1      ------------------------------------------------------------
                                                                                  

consensus_3039#0      ACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCC 120
consensus_3039#1      ---------------------------------------AATTCAGGCAA-AAAATTCCT 20
                                                             ** * *  *    **** ** 

consensus_3039#0      GTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTA 180
consensus_3039#1      TTCTTTAACTATCTATA--------------TTGTGTTTTTGACTGATATTAATTCGGTA 66
                       *   *  * *** * *              * ***  **  *  ** *    *  * **

consensus_3039#0      GTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTG 240
consensus_3039#1      TTT--GTT--TTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTG 122
                       *   *    *  * *********************************************

consensus_3039#0      TTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATC 300
consensus_3039#1      TTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATC 182
                      ************************************************************

consensus_3039#0      TTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCA 360
consensus_3039#1      TTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT--- 239
                      *********************************************************   

consensus_3039#0      TTTGCCGA 368
consensus_3039#1      --------