cluster # 304

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Schistosoma mansoni
cluster # 304 cluster # 304 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_304#0 length = 400 sequences # 1

consensus_304#1 length = 399 sequences # 1

consensusID : consensus_304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [AATGACGTATCCATTAGCAATCGTGTTAGACCGCGTAGACCAATTACAATAGACTGATTGCATTCAATCGATTCCTCTGAACTTGTTAGTTGTCCATTATCAGATTCTATTTTAACTGAATAGATATTTTGCTGAGCATCTGACGCAGAGGATAATAATTCTAAGTAATTTGTCCAAATTCTTTCAAATTCCCTACGATCTAACCAACCCATAGCGTTAAGACGTGTAATGTTCACTATTAAATGATCTAAATCCAGGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTAGATTCATGAAATGACATATTAATAGAACTGTAACTGTATGAACTGGATACGTTCAAAGTATGTAGGAGACGAGAAATTCCTAAGGTGCAAATGTTTAATT]

[+] EMBL CD117341             [AATGACGTATCCATTAGCAATCGTGTTAGACCGCGTAGACCAATTACAATAGACTGATTGCATTCAATCGATTCCTCTGAACTTGTTAGTTGTCCATTATCAGATTCTATTTTAACTGAATAGATATTTTGCTGAGCATCTGACGCAGAGGATAATAATTCTAAGTAATTTGTCCAAATTCTTTCAAATTCCCTACGATCTAACCAACCCATAGCGTTAAGACGTGTAATGTTCACTATTAAATGATCTAAATCCAGGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTAGATTCATGAAATGACATATTAATAGAACTGTAACTGTATGAACTGGATACGTTCAAAGTATGTAGGAGACGAGAAATTCCTAAGGTGCAAATGTTTAATT]




>consensus_304#0
AATGACGTATCCATTAGCAATCGTGTTAGACCGCGTAGACCAATTACAATAGACTGATTG
CATTCAATCGATTCCTCTGAACTTGTTAGTTGTCCATTATCAGATTCTATTTTAACTGAA
TAGATATTTTGCTGAGCATCTGACGCAGAGGATAATAATTCTAAGTAATTTGTCCAAATT
CTTTCAAATTCCCTACGATCTAACCAACCCATAGCGTTAAGACGTGTAATGTTCACTATT
AAATGATCTAAATCCAGGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTA
GATTCATGAAATGACATATTAATAGAACTGTAACTGTATGAACTGGATACGTTCAAAGTA
TGTAGGAGACGAGAAATTCCTAAGGTGCAAATGTTTAATT

consensusID : consensus_304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [GTGTGACCTTGATCACATTGCCCCACCTCTCAGTACATTGGGCTCCTGCAATGGACATGACGATGATGGCCTCTTAACCTGGTGGTTGTCCATTATCAGATTCTATTTTAACTGAGTATATATTACGCATGAGCACCAGCCTCAGATGATAATACTTCTAAGTAATTTGTCCAAATAATCTAAAACTCCCTACGATCTAACCAACCCATAGCGTTCAGACGTGTAGACTCTCACTATTAAATGATCTAAATCCAAGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTAGATTCATGAAATCACATATTAATAACAACTGTAACTGTATCAACTGGATACCTTCAAAGTATGTATGACACCATAAATTCCTAATGTGCAAATGTTTAATT]

[+] EMBL CD117346             [GTGTGACCTTGATCACATTGCCCCACCTCTCAGTACATTGGGCTCCTGCAATGGACATGACGATGATGGCCTCTTAACCTGGTGGTTGTCCATTATCAGATTCTATTTTAACTGAGTATATATTACGCATGAGCACCAGCCTCAGATGATAATACTTCTAAGTAATTTGTCCAAATAATCTAAAACTCCCTACGATCTAACCAACCCATAGCGTTCAGACGTGTAGACTCTCACTATTAAATGATCTAAATCCAAGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTAGATTCATGAAATCACATATTAATAACAACTGTAACTGTATCAACTGGATACCTTCAAAGTATGTATGACACCATAAATTCCTAATGTGCAAATGTTTAATT]




>consensus_304#1
GTGTGACCTTGATCACATTGCCCCACCTCTCAGTACATTGGGCTCCTGCAATGGACATGA
CGATGATGGCCTCTTAACCTGGTGGTTGTCCATTATCAGATTCTATTTTAACTGAGTATA
TATTACGCATGAGCACCAGCCTCAGATGATAATACTTCTAAGTAATTTGTCCAAATAATC
TAAAACTCCCTACGATCTAACCAACCCATAGCGTTCAGACGTGTAGACTCTCACTATTAA
ATGATCTAAATCCAAGTTTACAAATGAATTAATACATTCTGACGCTTTCGCATCATTAGA
TTCATGAAATCACATATTAATAACAACTGTAACTGTATCAACTGGATACCTTCAAAGTAT
GTATGACACCATAAATTCCTAATGTGCAAATGTTTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_304#0      -AATGACGT--ATC-CATTAGCAATCGTGTTAGACCGCGTAGACCAATTACAATAGACTG 56
consensus_304#1      GTGTGACCTTGATCACATTGCCCCACCTCTCAG--TACATTGGGCTCCTGCAATGGAC-- 56
                        **** *  *** ****  *   * * * **    * * *  *   * **** ***  

consensus_304#0      ATTGCATTCAATCGATTCCTCTGAACTTGTTAGTTGTCCATTATCAGATTCTATTTTAAC 116
consensus_304#1      ATGACGAT-GATGG---CCTCTTAACCTGGTGGTTGTCCATTATCAGATTCTATTTTAAC 112
                     **  *  *  ** *   ***** *** ** * ****************************

consensus_304#0      TGAATAGATATTTTGC-TGAGCATCTGACGCAGAGGATAATAATTCTAAGTAATTTGTCC 175
consensus_304#1      TGAGTATATATTACGCATGAGCACCAGCCTCAGATGATAATACTTCTAAGTAATTTGTCC 172
                     *** ** *****  ** ****** * * * **** ******* *****************

consensus_304#0      AAATTCTTTCAAATTCCCTACGATCTAACCAACCCATAGCGTTAAGACGTGTA-ATGTTC 234
consensus_304#1      AAATAATCTAAAACTCCCTACGATCTAACCAACCCATAGCGTTCAGACGTGTAGACTCTC 232
                     ****  * * *** ***************************** ********* *   **

consensus_304#0      ACTATTAAATGATCTAAATCCAGGTTTACAAATGAATTAATACATTCTGACGCTTTCGCA 294
consensus_304#1      ACTATTAAATGATCTAAATCCAAGTTTACAAATGAATTAATACATTCTGACGCTTTCGCA 292
                     ********************** *************************************

consensus_304#0      TCATTAGATTCATGAAATGACATATTAATAG-AACTGTAACTGTATGAACTGGATACGTT 353
consensus_304#1      TCATTAGATTCATGAAATCACATATTAATAACAACTGTAACTGTATCAACTGGATACCTT 352
                     ****************** ***********  ************** ********** **

consensus_304#0      CAAAGTATGTAGGAGACGAGAAATTCCTAAGGTGCAAATGTTTAATT 400
consensus_304#1      CAAAGTATGTATGACACCATAAATTCCTAATGTGCAAATGTTTAATT 399
                     *********** ** ** * ********** ****************