cluster # 3130

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Schistosoma mansoni
cluster # 3130 cluster # 3130 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3130#0 length = 280 sequences # 1

consensus_3130#1 length = 114 sequences # 1

consensusID : consensus_3130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCTATACAAATGGCTTACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCACCTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAATTACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAGGCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA]

[+] EMBL CD114777             [ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCTATACAAATGGCTTACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCACCTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAATTACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAGGCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA]




>consensus_3130#0
ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCTATACAAATGGCTT
ACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCACC
TTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAATT
ACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAGG
CTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA

consensusID : consensus_3130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 114
fasta sequence

                              [GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATTCATGTGCATTTGAATTAGGTAAGCCATCTGGATCAATACCACTATCATCGTCTG]

[+] EMBL CD168061             [GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATTCATGTGCATTTGAATTAGGTAAGCCATCTGGATCAATACCACTATCATCGTCTG]




>consensus_3130#1
GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATT
CATGTGCATTTGAATTAGGTAAGCCATCTGGATCAATACCACTATCATCGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3130#0      ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCT-ATACAAATGGCT 59
consensus_3130#1      GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATT 60
                         *  ** * * * **      * * *     **   * * *** * **  *   *  *

consensus_3130#0      TACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCAC 119
consensus_3130#1      CATGTGCATTTGAATTAGGTAAGCCATCTGGA--TCAATAC-CACTATCATCGTCTG--- 114
                       * * **  ** ** * ** **    **      ***  *  **   *   * * **   

consensus_3130#0      CTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAAT 179
consensus_3130#1      ------------------------------------------------------------
                                                                                  

consensus_3130#0      TACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAG 239
consensus_3130#1      ------------------------------------------------------------
                                                                                  

consensus_3130#0      GCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA 280
consensus_3130#1      -----------------------------------------