cluster # 3197

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Schistosoma mansoni
cluster # 3197 cluster # 3197 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3197#0 length = 637 sequences # 1

consensus_3197#1 length = 394 sequences # 1

consensusID : consensus_3197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTATTCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACTTATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAGAGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAAACGGGAAAACTCATCCAAATCACTGTTACTACATGCN]

[+] EMBL CD161541             [GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTATTCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACTTATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAGAGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAAACGGGAAAACTCATCCAAATCACTGTTACTACATGCN]




>consensus_3197#0
GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTAT
TCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACT
TATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAG
AGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATG
TAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCAT
TGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAG
ATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACA
GCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGAT
GTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAA
GTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAA
ACGGGAAAACTCATCCAAATCACTGTTACTACATGCN

consensusID : consensus_3197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [GGCACCAGTTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTT]

[-] EMBL CD116150             [GGCACCAGTTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTT]




>consensus_3197#1
GGCACCAGTTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGC
ATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTT
TTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAA
TTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAA
TTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAG
ATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACA
AGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3197#0      GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTAT 60
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACT 120
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAG 180
consensus_3197#1      ----------------------------------------------------GGCACCAG 8
                                                                          *  * ***

consensus_3197#0      AGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATG 240
consensus_3197#1      --TTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATG 66
                        ** *      **        **************************************

consensus_3197#0      TAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCAT 300
consensus_3197#1      TAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCAT 126
                      ************************************************************

consensus_3197#0      TGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAG 360
consensus_3197#1      TGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAG 186
                      ************************************************************

consensus_3197#0      ATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACA 420
consensus_3197#1      ATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACA 246
                      ************************************************************

consensus_3197#0      GCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGAT 480
consensus_3197#1      GCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGAT 306
                      ************************************************************

consensus_3197#0      GTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAA 540
consensus_3197#1      GTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAA 366
                      ************************************************************

consensus_3197#0      GTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAA 600
consensus_3197#1      GTGCGTGCTGGTCAATCCGTCGGCATTT-------------------------------- 394
                      ****************************                                

consensus_3197#0      ACGGGAAAACTCATCCAAATCACTGTTACTACATGCN 637
consensus_3197#1      -------------------------------------