cluster # 3202

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Schistosoma mansoni
cluster # 3202 cluster # 3202 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3202#0 length = 576 sequences # 1

consensus_3202#1 length = 396 sequences # 1

consensusID : consensus_3202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAACTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATGTATATGATATACAATGGATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTAGCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTGAATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTGGCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGTCGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTTCGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGTGGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAATTAGGCCCACAAACATCAATGGAAGCATACAACGATG]

[+] EMBL CD069595             [ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAACTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATGTATATGATATACAATGGATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTAGCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTGAATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTGGCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGTCGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTTCGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGTGGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAATTAGGCCCACAAACATCAATGGAAGCATACAACGATG]




>consensus_3202#0
ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAA
CTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATG
TATATGATATACAATGGATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTAG
CTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTGA
ATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTGG
CAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGTC
GATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTTC
GTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGTG
GTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAAT
TAGGCCCACAAACATCAATGGAAGCATACAACGATG

consensusID : consensus_3202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [AATGAACAGTCTTTCTAAACATCCAATAACGGGTCTTCGATGGTTATCTAATGAATGTATTGAGTTGTGCTCATTCATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTCGGTCGATTTTCTTCACCGGATGATCAGAATGATTTTAATCTAAATTCATCACAATTATCATTAAATAAGAACAATAAAGAAATCGATGTAGCTATAAAAATATTCATGTCGACTGAGAAACGTAGTTGGGAGACAGAAGTTGCACTTTTTAATGTTCCAGGTTTAGAACATATCAATATTCTACAATATTATGGTGCAGACCAGGTCATTGTGGATAATTCTATTGGCGAAGATAAACTAGAGTATTGGTTAGTAACAGAATATCATCC]

[+] EMBL CD126244             [AATGAACAGTCTTTCTAAACATCCAATAACGGGTCTTCGATGGTTATCTAATGAATGTATTGAGTTGTGCTCATTCATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTCGGTCGATTTTCTTCACCGGATGATCAGAATGATTTTAATCTAAATTCATCACAATTATCATTAAATAAGAACAATAAAGAAATCGATGTAGCTATAAAAATATTCATGTCGACTGAGAAACGTAGTTGGGAGACAGAAGTTGCACTTTTTAATGTTCCAGGTTTAGAACATATCAATATTCTACAATATTATGGTGCAGACCAGGTCATTGTGGATAATTCTATTGGCGAAGATAAACTAGAGTATTGGTTAGTAACAGAATATCATCC]




>consensus_3202#1
AATGAACAGTCTTTCTAAACATCCAATAACGGGTCTTCGATGGTTATCTAATGAATGTAT
TGAGTTGTGCTCATTCATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGT
GTGGCTCGGTCGATTTTCTTCACCGGATGATCAGAATGATTTTAATCTAAATTCATCACA
ATTATCATTAAATAAGAACAATAAAGAAATCGATGTAGCTATAAAAATATTCATGTCGAC
TGAGAAACGTAGTTGGGAGACAGAAGTTGCACTTTTTAATGTTCCAGGTTTAGAACATAT
CAATATTCTACAATATTATGGTGCAGACCAGGTCATTGTGGATAATTCTATTGGCGAAGA
TAAACTAGAGTATTGGTTAGTAACAGAATATCATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3202#0      ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAA 60
consensus_3202#1      -----------------------------------------AATGAACAGTCTTTCTAAA 19
                                                               *   *   *      ****

consensus_3202#0      CTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATG 120
consensus_3202#1      C-ATCCAATAACGGGTCTTCGATGGTTATCTAATG---AATGTATTGAGTTGTGCTCATT 75
                      * *    **     **    **   * *** * *    *  ****    ** *  **** 

consensus_3202#0      TATATGATATACAATGG-ATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTA 179
consensus_3202#1      CATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTC--GGTCGA 133
                       *** *  *      *  * *   * *   *   ****  *  ** * ****  ***  *

consensus_3202#0      GCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTG 239
consensus_3202#1      TTTTCTTCAC---CGGATGATCAGAATGATTTTAATCTAAAT-----TCATCACAATTAT 185
                        *  *  **    ***   **  ***  **  ** *  * *     *****   ***  

consensus_3202#0      AATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTG 299
consensus_3202#1      CATTAAATAAGAACAATAAAGAAATC-GATGTAGCTA-TAAAAATATTCATGTCGACTGA 243
                       ***     *    * **   ** ** *** *  **  *   * *  * *  ***  *  

consensus_3202#0      GCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGT 359
consensus_3202#1      GAAACGTAGTTGGGAGACAGAAGTTGCACTT---TTTAATGTTCCAGGTTTAGAACATAT 300
                      * **     ** * **   *    ** *       *  *  **    ***  * **   *

consensus_3202#0      CGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTT 419
consensus_3202#1      CAATAT------TCTACAATATT--ATGGTGCAGACCAGGTCATTGTGGAT--AATTCT- 349
                      * ****       **  * * **  **** **    *** *      ****  * **** 

consensus_3202#0      CGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGT 479
consensus_3202#1      ---ATTGGCGAAGATAAA------CTAGAGTATTGG---TTAGTAACAGAATATCATCC- 396
                         ****  *   **  *       *** ** ****   *** * *    ** *  *   

consensus_3202#0      GGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAA 539
consensus_3202#1      ------------------------------------------------------------
                                                                                  

consensus_3202#0      TTAGGCCCACAAACATCAATGGAAGCATACAACGATG 576
consensus_3202#1      -------------------------------------