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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCTAGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGGAAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACATGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATGCTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATTTTCCTATTTCCAAATAAAATGGTATCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGGGTATCGTTAATATCCAAGAATGCACTAACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCCGATGTCTATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAGTACTGAACACATGCAAGCACACACGATACCGCTTTATACAATCA]
[+] EMBL CD190199 [TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCTAGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGGAAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACATGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATGCTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATTTTCCTATTTCCAAATAAAATGGTATCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGGGTATCGTTAATATCCAAGAATGCACTAACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCCGATGTCTATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAGTACTGAACACATGCAAGCACACACGATACCGCTTTATACAATCA]
consensusID : consensus_3206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GTTATATGCTTTAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATTTTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTATTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGTATCCTCGAAATCATCACCTGTAACAGTTATGGGGGTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAACGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAACCGATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTACTGAACACTGCCCA]
[-] EMBL CD069613 [GTTATATGCTTTAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATTTTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTATTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGTATCCTCGAAATCATCACCTGTAACAGTTATGGGGGTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAACGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAACCGATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTACTGAACACTGCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3206#0 TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCT 60
consensus_3206#1 ------------------------------------------------------------
consensus_3206#0 AGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGG 120
consensus_3206#1 ------------------------------------------------------------
consensus_3206#0 AAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACA 180
consensus_3206#1 ------------------------------------------------------------
consensus_3206#0 TGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATG 240
consensus_3206#1 ------------------------------------------------------------
consensus_3206#0 CTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTG 300
consensus_3206#1 -----------------GTTATATGCTTTAAA-CATTTTCAGGAATGTATTCATTAACTG 42
*************** ***************************
consensus_3206#0 CCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAA 360
consensus_3206#1 CCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAA 102
************************************************************
consensus_3206#0 CAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATT 420
consensus_3206#1 CAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATT 162
********************** ** ***************************** ****
consensus_3206#0 TTCCTATTTCCAAAT------------------------------------AAAATGGTA 444
consensus_3206#1 TTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTA 222
*************** *********
consensus_3206#0 TCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAA 504
consensus_3206#1 TTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAA 282
* ************ ************ ***** **************************
consensus_3206#0 AAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGG 564
consensus_3206#1 AAAAACCTTCACCAAGAATACATG-TATCCTCGAAATCATCACCTGTAACAGTTATGGGG 341
************************ * ******************* *******
consensus_3206#0 GTATCGTTAATATCCAAGAATGCACT---------------------------------- 590
consensus_3206#1 GTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAA 401
******************* ******
consensus_3206#0 ---------------------AACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCC 629
consensus_3206#1 CGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAA--CC 459
************************* *** * ** **
consensus_3206#0 GATGTCT-ATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAG-TAC 687
consensus_3206#1 GATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTAC 519
******* ******** ****** ******************************** ***
consensus_3206#0 TGAACACATGCAAGCACACACGATACCGCTTTATACAATCA 728
consensus_3206#1 TGAACACTGCCCA---------------------------- 532
******* * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||