cluster # 3224

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Schistosoma mansoni
cluster # 3224 cluster # 3224 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3224#0 length = 458 sequences # 1

consensus_3224#1 length = 423 sequences # 1

consensusID : consensus_3224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [TGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAGTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTCTAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTATTATAATTGTTATTATGTATGACCACCGAGAACCGAA]

[+] EMBL CD069690             [TGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAGTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTCTAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTATTATAATTGTTATTATGTATGACCACCGAGAACCGAA]




>consensus_3224#0
TGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTT
GAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATC
TGAATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTA
TGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATT
CGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCAC
AACAATGGAAGAAGTATTCTTTCAGTATGTGGTTTTACTTGTATCTTATTGTTACTGTTT
CTAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACT
ATTATAATTGTTATTATGTATGACCACCGAGAACCGAA

consensusID : consensus_3224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGTCAGCTGTCGCAATCGTG]

[+] EMBL CD124418             [GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGTCAGCTGTCGCAATCGTG]




>consensus_3224#1
GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTG
ACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGA
AAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTG
AATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATG
GTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCG
AGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAA
CAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGTCAGCTGTCGCAATC
GTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3224#0      ----------------------------------------------------------TG 2
consensus_3224#1      GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTG 60
                                                                                **

consensus_3224#0      ACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGA 62
consensus_3224#1      ACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGA 120
                      ************************************************** *********

consensus_3224#0      AAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTG 122
consensus_3224#1      AAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTG 180
                      ************************************************************

consensus_3224#0      AATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATG 182
consensus_3224#1      AATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATG 240
                      ************* **********************************************

consensus_3224#0      GTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCG 242
consensus_3224#1      GTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCG 300
                      ************************************************************

consensus_3224#0      AGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAA 302
consensus_3224#1      AGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAA 360
                      ******************************************* ****************

consensus_3224#0      CAATGGAAGAAGTATTCTTTCA-GTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTC 361
consensus_3224#1      CAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGT----CAGCTGTCGC 416
                      ********************** **  **      **   ***  *       ****  *

consensus_3224#0      TAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTA 421
consensus_3224#1      AATCGTG----------------------------------------------------- 423
                       * * *                                                      

consensus_3224#0      TTATAATTGTTATTATGTATGACCACCGAGAACCGAA 458
consensus_3224#1      -------------------------------------