cluster # 3254

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Schistosoma mansoni
cluster # 3254 cluster # 3254 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3254#0 length = 242 sequences # 1

consensus_3254#1 length = 138 sequences # 1

consensusID : consensus_3254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCATCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTCTGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAGTATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTTAN]

[+] EMBL SM394                [GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCATCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTCTGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAGTATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTTAN]




>consensus_3254#0
GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCA
TCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTC
TGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAG
TATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTT
AN

consensusID : consensus_3254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [CTTGCCTTTTCTTGATCATCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAAATTAGAAGATGATAAACATGATGACGATGATGATGATGA]

[+] EMBL CD069882             [CTTGCCTTTTCTTGATCATCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAAATTAGAAGATGATAAACATGATGACGATGATGATGATGA]




>consensus_3254#1
CTTGCCTTTTCTTGATCATCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGA
ATATGGATGGTTTGATAAAATGGATGATATGATGAAAAAATTAGAAGATGATAAACATGA
TGACGATGATGATGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3254#0      GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCA 60
consensus_3254#1      ------------------------------------------CTTGCCTTTTCTTGATCA 18
                                                                      ***    *****

consensus_3254#0      TCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTC 120
consensus_3254#1      TCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAAT---ATGGATGGTTTGA 75
                      ***** * ***    *******    **  *  **** ** ***   **   *  **   

consensus_3254#0      TGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAG 180
consensus_3254#1      TAAAATGGATGATATGATGAAAAAAT-TAGAAGATGATAAACATGATGACG-ATGATGAT 133
                      * * *   **  * ***     *  * *      *  *  * **   **   *** * * 

consensus_3254#0      TATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTT 240
consensus_3254#1      GATGA------------------------------------------------------- 138
                       ** *                                                       

consensus_3254#0      AN 242
consensus_3254#1      --