cluster # 327

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Schistosoma mansoni
cluster # 327 cluster # 327 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_327#0 length = 495 sequences # 1

consensus_327#1 length = 155 sequences # 1

consensusID : consensus_327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTACGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAGTGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTAGAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGCTAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCAAAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGGTAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAACTAGTGCTTCAAATAT]

[+] EMBL CD138204             [TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTACGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAGTGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTAGAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGCTAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCAAAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGGTAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAACTAGTGCTTCAAATAT]




>consensus_327#0
TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTA
CGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAA
CTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAG
TGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTA
GAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGC
TAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCA
AAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGG
TAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAAC
TAGTGCTTCAAATAT

consensusID : consensus_327#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [GATTTACAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAGTGTTCAGTGAATGGTGTGAAGTTGGTACC]

[-] EMBL CD166566             [GATTTACAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAGTGTTCAGTGAATGGTGTGAAGTTGGTACC]




>consensus_327#1
GATTTACAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTAT
TTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTG
TTACAGTGTTCAGTGAATGGTGTGAAGTTGGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_327#0      TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTA 60
consensus_327#1      ------------------------------------------------------GATTTA 6
                                                                           ******

consensus_327#0      CGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAA 120
consensus_327#1      CAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAA 66
                     * **********************************************************

consensus_327#0      CTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAG 180
consensus_327#1      CTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAG 126
                     ****************************************************** * ***

consensus_327#0      TGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTA 240
consensus_327#1      TGTTCAGT------GAATGGTGTGAAGTTGGTACC------------------------- 155
                     ********       **     ****  *  **                           

consensus_327#0      GAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGC 300
consensus_327#1      ------------------------------------------------------------
                                                                                 

consensus_327#0      TAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCA 360
consensus_327#1      ------------------------------------------------------------
                                                                                 

consensus_327#0      AAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGG 420
consensus_327#1      ------------------------------------------------------------
                                                                                 

consensus_327#0      TAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAAC 480
consensus_327#1      ------------------------------------------------------------
                                                                                 

consensus_327#0      TAGTGCTTCAAATAT 495
consensus_327#1      ---------------