cluster # 3295

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Schistosoma mansoni
cluster # 3295 cluster # 3295 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3295#0 length = 376 sequences # 1

consensus_3295#1 length = 375 sequences # 1

consensusID : consensus_3295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCAGAAACTTGAAGTTTACTGAAAACTACAAATAAAACATTATTCACTATGAGTGATGAGATATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGCTCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCATCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGGGCACTAGTGGCACATTTGCGT]

[+] EMBL CD117545             [GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCAGAAACTTGAAGTTTACTGAAAACTACAAATAAAACATTATTCACTATGAGTGATGAGATATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGCTCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCATCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGGGCACTAGTGGCACATTTGCGT]




>consensus_3295#0
GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCAGAAA
CTTGAAGTTTACTGAAAACTACAAATAAAACATTATTCACTATGAGTGATGAGATATTCC
AGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTCCTTAC
TTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGCTCTAT
TCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCATCCAC
CTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGGGCACT
AGTGGCACATTTGCGT

consensusID : consensus_3295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [TATCGTTTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCAAAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAATATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCCTTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTATCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAAACAGCTAATTATGGAGTTAACACACATTGAG]

[+] EMBL CD117631             [TATCGTTTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCAAAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAATATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCCTTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTATCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAAACAGCTAATTATGGAGTTAACACACATTGAG]




>consensus_3295#1
TATCGTTTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCAA
AAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAATA
TTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTCC
TTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCCT
TCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTAT
CCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAAACAGCTAATTATGGAG
TTAACACACATTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3295#0      ----GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCA 56
consensus_3295#1      TATCGT-TTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCA 59
                          ** ****************** **********************************

consensus_3295#0      GAAACTTGAAGTTTACTGAAAACTACAAA-TAAAACATTATTCACTATGAGTGATGAGAT 115
consensus_3295#1      AAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAAT 119
                       **************************** **** ****** ********* ***** **

consensus_3295#0      ATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTC 175
consensus_3295#1      ATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTC 179
                      *************** ******************* ************************

consensus_3295#0      CTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGC 235
consensus_3295#1      CTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCC 239
                      *********** *************** ********* * ******* ** **  * * *

consensus_3295#0      TCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCA 295
consensus_3295#1      TTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTA 299
                      *   ** ***  * **** *** *  *  ** ** * *   * *** **** * * ** *

consensus_3295#0      TCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGG 355
consensus_3295#1      TCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAA-ACAGCTAATTATGG 358
                      ******* ***  **** *** ** **** *** * * ******* ***  *** *****

consensus_3295#0      GCACTAGTGGCACATTTGCGT 376
consensus_3295#1      A-GTTAACA-CACATTGAG-- 375
                          **    ******