cluster # 330

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Schistosoma mansoni
cluster # 330 cluster # 330 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_330#0 length = 526 sequences # 1

consensus_330#1 length = 279 sequences # 1

consensusID : consensus_330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATATCTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC]

[+] EMBL AI395184             [TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATATCTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC]




>consensus_330#0
TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATT
AATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCA
TTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAAT
ATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATAT
CACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGT
TCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCT
TTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGAT
GATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATAT
CTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC

consensusID : consensus_330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TACTACTACTTTAAACAGGAAGATGAGATACAATATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATT]

[+] EMBL CD121102             [TACTACTACTTTAAACAGGAAGATGAGATACAATATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATT]




>consensus_330#1
TACTACTACTTTAAACAGGAAGATGAGATACAATATATCATCCAATCTATCAATATCATT
ATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCT
AGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTGTAAGTAA
TCAATTAGATCCTAACAGATAGAATTAGTCTCTTCATTATAATTATTTACTTAGAATTAG
TCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_330#0      TTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATT 60
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      AATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCA 120
consensus_330#1      -----------TACTACTACT--TTAAACAGGAAGATGAGATACAAT-ATATCATCCAAT 46
                                 * *  ** *  *****    * *   * ***   * ** * **     

consensus_330#0      TTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAAT 180
consensus_330#1      CTATCAATATCATTATT--TCTGATCGTG-ATCTGGTTATACAGATCCT-TCAATT--GT 100
                      *** * *** ******  * * *  **  *  **  ** **** ** * * * **   *

consensus_330#0      ATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATAT 240
consensus_330#1      ATAGATATTTGTAAACATCTAGATCCCCAACAT-TATCATAAACAAGTATTTGAAAATGA 159
                     *** * **   *   *** * * *  *     * * * **  **   * ***   ***  

consensus_330#0      CACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGT 300
consensus_330#1      TACA---------TATCATCTTGTAAGTAATCAATTAGATCCTAACAGATAGAATTAGTC 210
                      **            ******* *  **  **      **  *     ****  *  *  

consensus_330#0      TCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCT 360
consensus_330#1      TCTTCATTATAATTATTTACTTAGAATTAGTCGTCA--TCAATTAGTTTTAAATGGTAAC 268
                     *****   **      **  **    ** **    *  ** **   ***** *   *   

consensus_330#0      TTTCCCCTCTTTCCTTTCCTTCCTTTCGTTCCCTTGGTTCCTTTCGTTCCTTTCTTGGAT 420
consensus_330#1      TTTCATCGATT------------------------------------------------- 279
                     ****  *  **                                                 

consensus_330#0      GATTTTGTTTTGCCTGATACGCGTTTGTTTGACGGCTTGTACTTCCTAGAGTTAACATAT 480
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      CTAGTCGGCTTACATTCGTTCCCGTCCGTTTCATCGGCTTACTACC 526
consensus_330#1      ----------------------------------------------