cluster # 3368

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3368 cluster # 3368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3368#0 length = 459 sequences # 1

consensus_3368#1 length = 275 sequences # 1

consensusID : consensus_3368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACATCACACCAATCAGTAAGCGAGATGATACCTGAGTTATGAATGTCCAGTTGACTGAAACATTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATTAACAGGATCGTTTAATGTTCTGTTCTTATCTAATACTTGATCTTGTACTTTTATAAGAACAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTAATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCACCAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAAATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT]

[+] EMBL CD196709             [CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACATCACACCAATCAGTAAGCGAGATGATACCTGAGTTATGAATGTCCAGTTGACTGAAACATTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATTAACAGGATCGTTTAATGTTCTGTTCTTATCTAATACTTGATCTTGTACTTTTATAAGAACAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTAATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCACCAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAAATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT]




>consensus_3368#0
CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACAT
CACACCAATCAGTAAGCGAGATGATACCTGAGTTATGAATGTCCAGTTGACTGAAACATT
CCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATTAA
CAGGATCGTTTAATGTTCTGTTCTTATCTAATACTTGATCTTGTACTTTTATAAGAACAA
ATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTAATG
GATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCACCAG
TAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAAATA
TAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT

consensusID : consensus_3368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAACTCCTGGAATGTTTCAGTCAACTGGACATTCATAACTCAGGTTAATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAATTCATACATTATTTAAATTCTGCCAAATCTGTCCATATGTGGTTCTTCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGATTCATACTCCGGTCCTCCTGCTTTGACATG]

[+] EMBL CD133559             [GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAACTCCTGGAATGTTTCAGTCAACTGGACATTCATAACTCAGGTTAATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAATTCATACATTATTTAAATTCTGCCAAATCTGTCCATATGTGGTTCTTCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGATTCATACTCCGGTCCTCCTGCTTTGACATG]




>consensus_3368#1
GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAACTCCTGGAATGTTTCAGTCAACT
GGACATTCATAACTCAGGTTAATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAG
ACATGATCTTATTCTTTTAATTCATACATTATTTAAATTCTGCCAAATCTGTCCATATGT
GGTTCTTCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATT
TTGGATTCATACTCCGGTCCTCCTGCTTTGACATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3368#0      CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACAT 60
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      CACACCAATCAGTAAGCGAGATGATACCTG-AGTTATGAATGTCCAGTTG-ACTGAAACA 118
consensus_3368#1      -----------------------GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAA 37
                                              *   *   *  * * **     **   *  **** *

consensus_3368#0      TTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATT 178
consensus_3368#1      CTCCTGGAATGTTTC---------AGTCAACTG--------GACATTCATAACTCAGGTT 80
                       *** *** * ****         * * * * *         ***  ** *   **  **

consensus_3368#0      AACAGGATCGTTTAATGTTCTGTTCTTATC-TAATACTTGATCTTGTACTTTTATAAGAA 237
consensus_3368#1      AATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAA 140
                      **    *  **** *  ** **** ***   *** *   **  *  *  * ** *   **

consensus_3368#0      CAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTA 297
consensus_3368#1      TTCATACATT---AT-----TTAAATTCTGCCAAA------TCTGTCCATATGTGGTTCT 186
                         *******   **     ****    **  ***      *** *   **     **  

consensus_3368#0      ATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCAC 357
consensus_3368#1      TCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGAT 246
                        *     *   * **** *   ***   **      *****    *** ** **   * 

consensus_3368#0      CAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAA 417
consensus_3368#1      TCATACTCCGGTCCT-----CCTGCTTTGACATG-------------------------- 275
                         **   *   * *     *** * **     *                          

consensus_3368#0      ATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT 459
consensus_3368#1      ------------------------------------------