cluster # 3406

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3406 cluster # 3406 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3406#0 length = 358 sequences # 1

consensus_3406#1 length = 141 sequences # 1

consensusID : consensus_3406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTCTGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATGCGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAATTTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTCTATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTGACTGAAATACTGGGCCTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA]

[+] EMBL CD161203             [TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTCTGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATGCGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAATTTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTCTATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTGACTGAAATACTGGGCCTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA]




>consensus_3406#0
TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTC
TGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATG
CGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAAT
TTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTC
TATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTG
ACTGAAATACTGGGCCTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA

consensusID : consensus_3406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence

                              [TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAACAGAAGAGAATAAACAGCGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTTTAATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC]

[+] EMBL CD071695             [TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAACAGAAGAGAATAAACAGCGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTTTAATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC]




>consensus_3406#1
TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAACAGAAGAGAATAAACAGCGTACAA
GGTGGCGTTCTGTTTCCAATGTGTGAAGTTTAATTATCTGATTAATCTCTGATTGGTTTG
TCTTGTGGTTCTTTTTGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3406#0      TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTC 60
consensus_3406#1      ------------------------------------------------------------
                                                                                  

consensus_3406#0      TGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATG 120
consensus_3406#1      ------------------------------------------------------------
                                                                                  

consensus_3406#0      CGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAAT 180
consensus_3406#1      ------------------------------------------------------------
                                                                                  

consensus_3406#0      TTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTC 240
consensus_3406#1      ------------------------TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAA 36
                                              **   * * *   **   * *   *  *  * **  

consensus_3406#0      TATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTG 300
consensus_3406#1      CAGAAGAGAATAAACAG--CGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTT--TA 92
                       * *  * *  *****      ** *  *     * **     **  ***  ****  * 

consensus_3406#0      ACTGAAATACTGGGC-CTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA 358
consensus_3406#1      ATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC---------- 141
                      * *     * *   * *****   * * * *** ** * *  **   **