cluster # 3431

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Schistosoma mansoni
cluster # 3431 cluster # 3431 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3431#0 length = 512 sequences # 1

consensus_3431#1 length = 172 sequences # 1

consensusID : consensus_3431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGACGTATTGGGACAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGTAGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGATTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGTTTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGAATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATACATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC]

[+] EMBL CD194282             [GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGACGTATTGGGACAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGTAGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGATTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGTTTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGAATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATACATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC]




>consensus_3431#0
GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGACGTATTGGGACA
GTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGATTA
TTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGTAGTACCACCT
ACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAA
CCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGATTCACCCTCC
TTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGTTTGTGGAATA
GAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGAATGCTGATTG
CTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATACATTTGTATCA
GTATCAGTTACCGGTTCAACTGGTTCTTCATC

consensusID : consensus_3431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGTTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG]

[-] EMBL CD071858             [TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGTTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG]




>consensus_3431#1
TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGT
ATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGT
AGGGGGTTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3431#0      ----GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGAC-----GT 51
consensus_3431#1      TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGT 60
                           *   *** ****          * *  *    * ***   ***** **     **

consensus_3431#0      ATTGGGA-CAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGT 110
consensus_3431#1      ATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGT 120
                      ***** *  ***************************************************

consensus_3431#0      AGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGT 170
consensus_3431#1      AGGGGG-TTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG------- 172
                      ****** **************************************** ** **       

consensus_3431#0      AGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAAC 230
consensus_3431#1      ------------------------------------------------------------
                                                                                  

consensus_3431#0      TGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGA 290
consensus_3431#1      ------------------------------------------------------------
                                                                                  

consensus_3431#0      TTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGT 350
consensus_3431#1      ------------------------------------------------------------
                                                                                  

consensus_3431#0      TTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGA 410
consensus_3431#1      ------------------------------------------------------------
                                                                                  

consensus_3431#0      ATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATAC 470
consensus_3431#1      ------------------------------------------------------------
                                                                                  

consensus_3431#0      ATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC 512
consensus_3431#1      ------------------------------------------