cluster # 347

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Schistosoma mansoni
cluster # 347 cluster # 347 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_347#0 length = 473 sequences # 1

consensus_347#1 length = 465 sequences # 1

consensusID : consensus_347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GAGCTCGGTACCCTGCCTACACCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAGTCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATGACGTTGGAATGCAGTTCGGAATGCGTGTGGCCACGCGTGTCATGAGCTCCGGCTACCAGGTGCAACAGACCAGCAGCCACACAGTGACGGAAGC]

[+] EMBL CD168549             [GAGCTCGGTACCCTGCCTACACCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAGTCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATGACGTTGGAATGCAGTTCGGAATGCGTGTGGCCACGCGTGTCATGAGCTCCGGCTACCAGGTGCAACAGACCAGCAGCCACACAGTGACGGAAGC]




>consensus_347#0
GAGCTCGGTACCCTGCCTACACCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACT
GAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAA
CGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAA
GAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACG
TCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAACTA
GTGAAACATGTGACACCAGCACCCTACGTCGAGTCAACACTATCCATGGCCATGAAGGTC
GAGAAGCCAGTGACTCATGACGTTGGAATGCAGTTCGGAATGCGTGTGGCCACGCGTGTC
ATGAGCTCCGGCTACCAGGTGCAACAGACCAGCAGCCACACAGTGACGGAAGC

consensusID : consensus_347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GCTCGGTACCCTGCCATCACCGACTGCCCACAGGCGACCTCCGTCACCACACACATCGTGGAATCCAGTCAGCATGAGATTGTCTCGAAACGCACCGTTCAAGTCAAAGCTCCTCTCATCACCGAGACCGCCTCATTAGAGTTACCGACACCTGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAGTCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATG]

[+] EMBL CD168563             [GCTCGGTACCCTGCCATCACCGACTGCCCACAGGCGACCTCCGTCACCACACACATCGTGGAATCCAGTCAGCATGAGATTGTCTCGAAACGCACCGTTCAAGTCAAAGCTCCTCTCATCACCGAGACCGCCTCATTAGAGTTACCGACACCTGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAGTCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATG]




>consensus_347#1
GCTCGGTACCCTGCCATCACCGACTGCCCACAGGCGACCTCCGTCACCACACACATCGTG
GAATCCAGTCAGCATGAGATTGTCTCGAAACGCACCGTTCAAGTCAAAGCTCCTCTCATC
ACCGAGACCGCCTCATTAGAGTTACCGACACCTGAACCTGTTCGCAAAACATCTCTAGTG
GAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGCT
GTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCG
AACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAA
GTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAGT
CAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_347#0      ------------------------------------------------------------
consensus_347#1      GCTCGGTACCCTGCCATCACCGACTGCCCACAGGCGACCTCCGTCACCACACACATCGTG 60
                                                                                 

consensus_347#0      --------------------GAGCTCGGTACCCTGCCTACAC-CGACTGCAGCTTTCGTG 39
consensus_347#1      GAATCCAGTCAGCATGAGATTGTCTCGAAACGCACCGTTCAAGTCAAAGCTCCTCTCATC 120
                                            ****  ** *  * * **    *  **  ** ** * 

consensus_347#0      AA-GAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAG 98
consensus_347#1      ACCGAGACCGCCTCATTAGAGTTACCGACACCTGAACCTGTTC-GCAAAACATCTCTAGT 179
                     *  *******  *    * * * *    **  ** *   * *  *** * *   * *   

consensus_347#0      TCTGACCACACACAAGTTAGAACGGGAAGTGGTCGA--GAGGAGTCTGT---GTACCAGC 153
consensus_347#1      GGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGC 239
                          *******     *  ****       *****   *  * **      ********

consensus_347#0      TGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC 213
consensus_347#1      TGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC 299
                     ************************************************************

consensus_347#0      GAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCA 273
consensus_347#1      GAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCA 359
                     ************************************************************

consensus_347#0      AGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAG 333
consensus_347#1      AGTCTGTGTCAGACAACCAGTGAACTAGTGAAACATGTGACACCAGCACCCTACGTCGAG 419
                     ************************************************************

consensus_347#0      TCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATGACGTTGGAATGCAG 393
consensus_347#1      TCAACACTATCCATGGCCATGAAGGTCGAGAAGCCAGTGACTCATG-------------- 465
                     **********************************************              

consensus_347#0      TTCGGAATGCGTGTGGCCACGCGTGTCATGAGCTCCGGCTACCAGGTGCAACAGACCAGC 453
consensus_347#1      ------------------------------------------------------------
                                                                                 

consensus_347#0      AGCCACACAGTGACGGAAGC 473
consensus_347#1      --------------------