cluster # 3483

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3483 cluster # 3483 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3483#0 length = 563 sequences # 1

consensus_3483#1 length = 194 sequences # 1

consensusID : consensus_3483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTAATTTATTGAATCAATACTTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTTCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCATCATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAGGAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGAATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGTTTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTCCCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCATGTATATTCGGCTTTGTATCCAGTC]

[+] EMBL CD201391             [TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTAATTTATTGAATCAATACTTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTTCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCATCATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAGGAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGAATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGTTTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTCCCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCATGTATATTCGGCTTTGTATCCAGTC]




>consensus_3483#0
TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTAATTTATTGAATCAATACT
TATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTTC
AACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATAC
ATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCATC
ATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAGG
AGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGAA
TCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGTT
TATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTCC
CTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCATG
TATATTCGGCTTTGTATCCAGTC

consensusID : consensus_3483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [GAGTACGTTTATTAAATCGTGTTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGGCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCATCA]

[+] EMBL CD149498             [GAGTACGTTTATTAAATCGTGTTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGGCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCATCA]




>consensus_3483#1
GAGTACGTTTATTAAATCGTGTTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGA
AACAAACCGGGGCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTG
ACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTAT
TATCGGCGTCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3483#0      TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTA-ATTTATTGAATCAATAC 59
consensus_3483#1      -------------------------------------GAGTACGTTTATTAAATCGT--G 21
                                                            ****  ****** ****     

consensus_3483#0      TTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTT 119
consensus_3483#1      TTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGG--------- 72
                      ******* *****  * *      ** **  *    *  *  * *     *         

consensus_3483#0      CAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATA 179
consensus_3483#1      CAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATA 132
                      ************************************************************

consensus_3483#0      CATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCAT 239
consensus_3483#1      CATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCAT 192
                      ******************************************* ********* ******

consensus_3483#0      CATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAG 299
consensus_3483#1      CA---------------------------------------------------------- 194
                      **                                                          

consensus_3483#0      GAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGA 359
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      ATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGT 419
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      TTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTC 479
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCAT 539
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      GTATATTCGGCTTTGTATCCAGTC 563
consensus_3483#1      ------------------------