cluster # 356

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Schistosoma mansoni
cluster # 356 cluster # 356 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_356#0 length = 629 sequences # 1

consensus_356#1 length = 379 sequences # 1

consensusID : consensus_356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAACCGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCGGTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGGGTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAATACCTGGAAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAACAGCTCACTGGTCTAGACAAGGGTTCCTGCGC]

[+] EMBL CD084627             [CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAACCGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCGGTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGGGTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAATACCTGGAAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAACAGCTCACTGGTCTAGACAAGGGTTCCTGCGC]




>consensus_356#0
CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCG
CGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGT
GTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAAC
CGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCG
GTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCG
GAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGG
GTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAA
TACCTGGAAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGC
AACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGG
ATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAACAG
CTCACTGGTCTAGACAAGGGTTCCTGCGC

consensusID : consensus_356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [GAAGAGGCCAGGCAACTTCTACGATCCGTCACTATCCACTAGCCCAGGAATATTAACCTGGTTGCCATCGGTTACGCCTCTCGGCCCCACCTTAGGATCCGGCTCACCCTCCTCAGATTAACTTTAAGGAGGAACCCTTGGTCTTTCGGCGACAGTGTCTCTCACACTGTTAGTCGTTACTCATGTCAGCATTCGCACTTCCGATATCTCCAACAGTCCTCACGGATCTGCCTTCACAGACTTACGGAACGTTCCGCTACCGCGCATCTTGCGATGCACCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCCTCT]

[+] EMBL CD086833             [GAAGAGGCCAGGCAACTTCTACGATCCGTCACTATCCACTAGCCCAGGAATATTAACCTGGTTGCCATCGGTTACGCCTCTCGGCCCCACCTTAGGATCCGGCTCACCCTCCTCAGATTAACTTTAAGGAGGAACCCTTGGTCTTTCGGCGACAGTGTCTCTCACACTGTTAGTCGTTACTCATGTCAGCATTCGCACTTCCGATATCTCCAACAGTCCTCACGGATCTGCCTTCACAGACTTACGGAACGTTCCGCTACCGCGCATCTTGCGATGCACCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCCTCT]




>consensus_356#1
GAAGAGGCCAGGCAACTTCTACGATCCGTCACTATCCACTAGCCCAGGAATATTAACCTG
GTTGCCATCGGTTACGCCTCTCGGCCCCACCTTAGGATCCGGCTCACCCTCCTCAGATTA
ACTTTAAGGAGGAACCCTTGGTCTTTCGGCGACAGTGTCTCTCACACTGTTAGTCGTTAC
TCATGTCAGCATTCGCACTTCCGATATCTCCAACAGTCCTCACGGATCTGCCTTCACAGA
CTTACGGAACGTTCCGCTACCGCGCATCTTGCGATGCACCCTAAGCTTCGGTGTATGACT
TAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTT
TCTTTAAAGGATGGCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_356#0      CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCG 60
consensus_356#1      ------------------------------------------------------------
                                                                                 

consensus_356#0      CGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGT 120
consensus_356#1      ------------------------------------------------------------
                                                                                 

consensus_356#0      GTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAAC 180
consensus_356#1      ----------------------------------------------------GAAGAGGC 8
                                                                            **  *

consensus_356#0      CGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCG 240
consensus_356#1      CAGGCAACTT--CTACGATCCG--TCACTATCCACTA----GCCCAGGAATATTAACCTG 60
                     * **  *  *  * * *  * *  * *   * *  **    ** * ***      * * *

consensus_356#0      GTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCG 300
consensus_356#1      GTTGCCATCGGTTACGCCTC---TCGGCCCCACCTTAGGATC--CGGCTCACCCTCCTCA 115
                     **  *  * *   * * ***   *  **     **  ** *    ***  ***   * * 

consensus_356#0      GAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGG 360
consensus_356#1      GA-----TTAACTTTAAGGAGGAACCCTT--GGTCTTTCGGCGACAGTGTCTCTCACACT 168
                     **      *   * *  *    * *  **  ***    *  ***  *  *    **    

consensus_356#0      GTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAA 420
consensus_356#1      GTTAGTCGTTACTCATGTCAGCA---TTCGCACTTCCGATATCTCCAAC-AGTCCTCACG 224
                     **    *  *      *  **       * **   *    *   ***** *  *  *   

consensus_356#0      TACCTGGAAGTACTG-CTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGG 479
consensus_356#1      GATCTGCCTTCACAGACTTACGGAACGTTC------CGCTACCGCGCATCTTGCGATGCA 278
                      * ***     ** * **   *  **   *       **** **  * ** **    *  

consensus_356#0      CAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAA-GTGGGAAAGGATGTGG 538
consensus_356#1      CCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTT 338
                     *   ** * *    *   *      * **  ** * *       *  * **    * *  

consensus_356#0      GGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAAC 598
consensus_356#1      AGACCAGTGAGCTGTTACGCT-TTCTTTAAAGGATGGCCTCT------------------ 379
                      ** *    * *    * * * **   * * *    ***                     

consensus_356#0      AGCTCACTGGTCTAGACAAGGGTTCCTGCGC 629
consensus_356#1      -------------------------------