cluster # 3695

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Schistosoma mansoni
cluster # 3695 cluster # 3695 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3695#0 length = 546 sequences # 1

consensus_3695#1 length = 351 sequences # 1

consensusID : consensus_3695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CATTTTGCACAAACCGAAGATTTAAATCCTTTGATTTATGGCGGCAGTCCCTCAGTTAGACAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTTCGAAGTGATGTAGGATTTTTGGAATTAGTCAACTGGAATTATATTGTTCTAGATGAGGGTCATATTATCAAAAGTAGTAAATCAAAGGTCACTCGTGCAGTAAAACATTTAGTTGCTCAGCACCGTCTTATTTTGACGGGAACACCTATTCAGAATAGAGTTACTGAGCTATGGTCTCTATTCGGCTTTCTTATGCCCGAGTTTCTGGGTACAGAACAGTACTTTTTAGCGAAATTCGCGCGTCCTGTGGCTTCTAGTCGAGATCCGAAAGCTTCTAAATCTGACCAACAAGCAGGTCAATTAGCACTAGAGAAACTTCATCGACTTGTATTGCCATTTATGTTGAGACGGTTAAAAGAGGATGTTATGCAAGATTTACCGCCGAAGATTATTCAAGATTTCGCTTGTANAATGACACCGATTCAA]

[+] EMBL CD170436             [CATTTTGCACAAACCGAAGATTTAAATCCTTTGATTTATGGCGGCAGTCCCTCAGTTAGACAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTTCGAAGTGATGTAGGATTTTTGGAATTAGTCAACTGGAATTATATTGTTCTAGATGAGGGTCATATTATCAAAAGTAGTAAATCAAAGGTCACTCGTGCAGTAAAACATTTAGTTGCTCAGCACCGTCTTATTTTGACGGGAACACCTATTCAGAATAGAGTTACTGAGCTATGGTCTCTATTCGGCTTTCTTATGCCCGAGTTTCTGGGTACAGAACAGTACTTTTTAGCGAAATTCGCGCGTCCTGTGGCTTCTAGTCGAGATCCGAAAGCTTCTAAATCTGACCAACAAGCAGGTCAATTAGCACTAGAGAAACTTCATCGACTTGTATTGCCATTTATGTTGAGACGGTTAAAAGAGGATGTTATGCAAGATTTACCGCCGAAGATTATTCAAGATTTCGCTTGTANAATGACACCGATTCAA]




>consensus_3695#0
CATTTTGCACAAACCGAAGATTTAAATCCTTTGATTTATGGCGGCAGTCCCTCAGTTAGA
CAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTT
CGAAGTGATGTAGGATTTTTGGAATTAGTCAACTGGAATTATATTGTTCTAGATGAGGGT
CATATTATCAAAAGTAGTAAATCAAAGGTCACTCGTGCAGTAAAACATTTAGTTGCTCAG
CACCGTCTTATTTTGACGGGAACACCTATTCAGAATAGAGTTACTGAGCTATGGTCTCTA
TTCGGCTTTCTTATGCCCGAGTTTCTGGGTACAGAACAGTACTTTTTAGCGAAATTCGCG
CGTCCTGTGGCTTCTAGTCGAGATCCGAAAGCTTCTAAATCTGACCAACAAGCAGGTCAA
TTAGCACTAGAGAAACTTCATCGACTTGTATTGCCATTTATGTTGAGACGGTTAAAAGAG
GATGTTATGCAAGATTTACCGCCGAAGATTATTCAAGATTTCGCTTGTANAATGACACCG
ATTCAA

consensusID : consensus_3695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [ACTGAAGATTTAATCCTTGATTTATGGCGGCAGTCCCTCAGTTAGACAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTTCGAAGTGATGTAGGATTTTGNGAGTAAGTTTTTCCGCATTAATATTTGGTTATCTCTTTACAAACAGTTCCTGAGATCTTTGATACATAACCTCATTCTGTAATCGTTTTATTTGATCAATCGTCTCTATTTCATTATCTTGTACGAATTTTACTTATGTAAAGTGTATATCTGTTGATTATTCGGTTATTCTTAATTGCTTGATTTTTGAGATACAATAACTGATATCGTTTGGAATGCTACTG]

[-] EMBL CD200366             [ACTGAAGATTTAATCCTTGATTTATGGCGGCAGTCCCTCAGTTAGACAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTTCGAAGTGATGTAGGATTTTGNGAGTAAGTTTTTCCGCATTAATATTTGGTTATCTCTTTACAAACAGTTCCTGAGATCTTTGATACATAACCTCATTCTGTAATCGTTTTATTTGATCAATCGTCTCTATTTCATTATCTTGTACGAATTTTACTTATGTAAAGTGTATATCTGTTGATTATTCGGTTATTCTTAATTGCTTGATTTTTGAGATACAATAACTGATATCGTTTGGAATGCTACTG]




>consensus_3695#1
ACTGAAGATTTAATCCTTGATTTATGGCGGCAGTCCCTCAGTTAGACAAAACCTTCAGTC
CAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTTCGAAGTGATGTAGG
ATTTTGNGAGTAAGTTTTTCCGCATTAATATTTGGTTATCTCTTTACAAACAGTTCCTGA
GATCTTTGATACATAACCTCATTCTGTAATCGTTTTATTTGATCAATCGTCTCTATTTCA
TTATCTTGTACGAATTTTACTTATGTAAAGTGTATATCTGTTGATTATTCGGTTATTCTT
AATTGCTTGATTTTTGAGATACAATAACTGATATCGTTTGGAATGCTACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3695#0      CATTTTGCACAAACCGAAGATTTAAATCCTTTGATTTATGGCGGCAGTCCCTCAGTTAGA 60
consensus_3695#1      ------------ACTGAAGATTTAA--TCCTTGATTTATGGCGGCAGTCCCTCAGTTAGA 46
                                  ** **********   * ******************************

consensus_3695#0      CAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTT 120
consensus_3695#1      CAAAACCTTCAGTCCAAATTACATCAGTATGATGTAATCATTACATCGTATGACTTGGTT 106
                      ************************************************************

consensus_3695#0      CGAAGTGATGTAGGATTTTTGGAATTAGTCAACTGGAATTA-TATTGTTCTAGATG---A 176
consensus_3695#1      CGAAGTGATGTAGGATTTTGNGAGTAAGTTTTTCCGCATTAATATTTGGTTATCTCTTTA 166
                      *******************  ** * ***      * **** ****    **  *    *

consensus_3695#0      GGGTCATATTATCAAAAGTAGTAAATCAAAGGTCACTCGTGCAGTAAAACATTTAGTTGC 236
consensus_3695#1      CAAACAGTTCCTGAGATCTTTGATACATAACCTCATTCTGTAATCGTTTTATTTGATCAA 226
                          **  *  * * *  *   * *   **  *** **    *       ****  *   

consensus_3695#0      TCAGCACCGTCTTATTTTGACGGGAACACCTATTCAGAATAGAGTTACTGAGCTATGGTC 296
consensus_3695#1      TCGTCTCTATTTCATTATCTTGTACGAATTTTACTTATGTAAAGTGTATA---TCTGTTG 283
                      **  * *  * * *** *   *     *  *        ** ***   *    * ** * 

consensus_3695#0      TCTATTCGGCT-TTCTTA--TGCCCGAGTTTCTGGGTACAGAACAGTACTTTTTAGCGAA 353
consensus_3695#1      ATTATTCGGTTATTCTTAATTGCTTGATTTTTGAGATACAATA-ACTGATATCGTTTGGA 342
                        ******* * ******  ***  ** ***   * ****  * * *  * *     * *

consensus_3695#0      ATTCGCGCGTCCTGTGGCTTCTAGTCGAGATCCGAAAGCTTCTAAATCTGACCAACAAGC 413
consensus_3695#1      ATGCTACTG--------------------------------------------------- 351
                      ** *    *                                                   

consensus_3695#0      AGGTCAATTAGCACTAGAGAAACTTCATCGACTTGTATTGCCATTTATGTTGAGACGGTT 473
consensus_3695#1      ------------------------------------------------------------
                                                                                  

consensus_3695#0      AAAAGAGGATGTTATGCAAGATTTACCGCCGAAGATTATTCAAGATTTCGCTTGTANAAT 533
consensus_3695#1      ------------------------------------------------------------
                                                                                  

consensus_3695#0      GACACCGATTCAA 546
consensus_3695#1      -------------