cluster # 3696

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Schistosoma mansoni
cluster # 3696 cluster # 3696 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3696#0 length = 579 sequences # 1

consensus_3696#1 length = 323 sequences # 1

consensusID : consensus_3696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTAGACAACTGGTCGATACAACAAAGGCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATACAAATCAATCATCCAGATTTAAAAGCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTTCATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCAGACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAAAAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTCTAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAAATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAGTCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGACAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT]

[+] EMBL CD073190             [TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTAGACAACTGGTCGATACAACAAAGGCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATACAAATCAATCATCCAGATTTAAAAGCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTTCATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCAGACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAAAAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTCTAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAAATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAGTCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGACAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT]




>consensus_3696#0
TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTAGACAACTGGTCGATACAACAAAGG
CAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATACAAATCAATCATCCAG
ATTTAAAAGCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTTCAT
GGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCAGAC
GTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAAAAA
TAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTCTAA
CTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAAATG
CTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAGTCT
AGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGACAA
GGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT

consensusID : consensus_3696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAGGCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCCAGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNTCATGGGTCACGTAGCTGCCAANATTTCTGCCNACTATACAATGCCAGGNTGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAGCAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTTC]

[-] EMBL SM539                [ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAGGCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCCAGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNTCATGGGTCACGTAGCTGCCAANATTTCTGCCNACTATACAATGCCAGGNTGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAGCAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTTC]




>consensus_3696#1
ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAGGCAGT
AAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCCAGATT
TANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNTCATGG
GTCACGTAGCTGCCAANATTTCTGCCNACTATACAATGCCAGGNTGGNNTGTATCTCTTG
TCGCATTCTTTTTTAATAAAAGCAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCT
TCAGCACAAATTTTCACTACTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3696#0      TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTA-GACAACTGGTCGATACAACAAAG 59
consensus_3696#1      -----ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAG 55
                           ***************** ************* ********** ******** ***

consensus_3696#0      GCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATAC-AAATCAATCATCC 118
consensus_3696#1      GCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCC 115
                      ********************* ****   ***************** *************

consensus_3696#0      AGATTTAAAA-GCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTT 177
consensus_3696#1      AGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNT 175
                      ******* ** ******* *************************************** *

consensus_3696#0      CATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCA 237
consensus_3696#1      CATGGGTCACGTAGCTGCCAAN---------------ATTTCTGCCNACTATAC------ 214
                      ************* ***  **                * * *  *  ** ***       

consensus_3696#0      GACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAA 297
consensus_3696#1      ---------AATGCCAGGN---TGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAG 262
                               **  * *      ***  *  *  *  * *   *   *  *** * **** 

consensus_3696#0      AAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTC 357
consensus_3696#1      CAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTT 322
                       *  *  **  * *  * **  *       *     * ***     **  **   ** * 

consensus_3696#0      TAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAA 417
consensus_3696#1      C----------------------------------------------------------- 323
                                                                                  

consensus_3696#0      ATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAG 477
consensus_3696#1      ------------------------------------------------------------
                                                                                  

consensus_3696#0      TCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGA 537
consensus_3696#1      ------------------------------------------------------------
                                                                                  

consensus_3696#0      CAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT 579
consensus_3696#1      ------------------------------------------