cluster # 371

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Schistosoma mansoni
cluster # 371 cluster # 371 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_371#0 length = 450 sequences # 1

consensus_371#1 length = 437 sequences # 1

consensusID : consensus_371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGTGACGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGGTGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGGTGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGTCGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCTTTGAAAGTGTGTACGGGTCTGCATATGGTAAAGTTACTGTGAACGACAGACTTTAGTTTCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCTCTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC]

[+] EMBL AI764952             [TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGTGACGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGGTGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGGTGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGTCGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCTTTGAAAGTGTGTACGGGTCTGCATATGGTAAAGTTACTGTGAACGACAGACTTTAGTTTCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCTCTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC]




>consensus_371#0
TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGTGACGTACACGCGAAGAAGGAG
ACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGGTGCAAGCTGGCG
AAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGGTGGTTTCGTGTT
GGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGTCGTCAGGTGTCT
TTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCTTTGAAAGTGTGTAC
GGGTCTGCATATGGTAAAGTTACTGTGAACGACAGACTTTAGTTTCCTGTACACGTGTAA
ACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCTCTATCGAGATGGTATCA
TGTAGTCGCCGACTCTCGATGATCATCGTC

consensusID : consensus_371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [GTTGTTGTTGTTGTTTAGACTATTGACGTATGTGTATGACATAAGTATAGATGTATGCATACATGTGTATATTTGATTGTATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACTTTAGTGTAGATAGATGAGTGTATAGTGTATAGTGTGTGTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAGTTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAATGTATTGGACGGTGTTTAATCAGCTGGGCTAAATAGATAGTGAGCTGTTAAGTTAATCACAGGGTGGGGTCTATCACAACCTGTTCCATGTGCAGCTGA]

[+] EMBL CD066035             [GTTGTTGTTGTTGTTTAGACTATTGACGTATGTGTATGACATAAGTATAGATGTATGCATACATGTGTATATTTGATTGTATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACTTTAGTGTAGATAGATGAGTGTATAGTGTATAGTGTGTGTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAGTTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAATGTATTGGACGGTGTTTAATCAGCTGGGCTAAATAGATAGTGAGCTGTTAAGTTAATCACAGGGTGGGGTCTATCACAACCTGTTCCATGTGCAGCTGA]




>consensus_371#1
GTTGTTGTTGTTGTTTAGACTATTGACGTATGTGTATGACATAAGTATAGATGTATGCAT
ACATGTGTATATTTGATTGTATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTG
TCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTA
CTTTAGTGTAGATAGATGAGTGTATAGTGTATAGTGTGTGTGTGTGTGTGTTTGTGCAAG
CGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAGTTGGTGGTAACTGTGGACTTG
GCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAATGTATTGGACGGTGTTTAATCA
GCTGGGCTAAATAGATAGTGAGCTGTTAAGTTAATCACAGGGTGGGGTCTATCACAACCT
GTTCCATGTGCAGCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_371#0      -----------TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGT-GACGTACAC 48
consensus_371#1      GTTGTTGTTGTTGTTTAGACTATTGACGT-ATGT-GTATGACATAAGTATAGATGTATGC 58
                                *  * **   **  * ** * ** *  *** *   ** * ** ***  *

consensus_371#0      GCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGG 108
consensus_371#1      ATACATGTGTATATT-TGATTGTATGTGAATAAATAAACATTTG----TTTATCATCTGC 113
                         *   * * *    **  *   ***   **       *  *    * * ** * ** 

consensus_371#0      TGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGG 168
consensus_371#1      --CTGTCTGTCT--GTCTGTTTATAATTAG-CGGTGCAGATATTTAT-GTAAATACACA- 166
                       *   *** *   *  * ** ** ** ** *       ** **    * **  *     

consensus_371#0      TGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGT 228
consensus_371#1      TAGATTTGTGT--GTA-CTTTAGTGTAGATAGAT-GAGTGTATAGT---GTATAGTGTGT 219
                     * * ** ****  * * ***   ** ** * *    *     * **       *    **

consensus_371#0      CGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCT-- 286
consensus_371#1      GTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAG 279
                           **** ***   * *    *    **  * *   ***  *   * **     *  

consensus_371#0      TTGAAAGTGTGTACGGGTCTG-CATATGGTAAAGTTACTG-TGAACGACAGACTTTAGTT 344
consensus_371#1      TTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAAT 339
                     ***   **   *  **   ** * * *   **      ** **  * * * **  **  *

consensus_371#0      -TCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCT 403
consensus_371#1      GTATTGGACG-GTGTTTAATCAGCTGGGCTAAATAGATAGTGAGC---TGTTAAGTTAAT 395
                      *  ** **  ****  *      *    * *   ****   *     *** * **   *

consensus_371#0      CTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC 450
consensus_371#1      CA--CAGGGTGGGGTC-TATCACAACCTGTTCCATGTGCAGCTGA-- 437
                     *   *  * ***  ** * *     **   **    **    *