cluster # 3717

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Schistosoma mansoni
cluster # 3717 cluster # 3717 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3717#0 length = 357 sequences # 1

consensus_3717#1 length = 282 sequences # 1

consensusID : consensus_3717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCAGCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCCCCATTGAATGATGCAATAAATGTAGAAGAAAATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGATAATCTTGGCGGATTATCACAACCTATCAATTCTGATCATTCAAATCATCATTGTTCTGTATCATTGGATTCTGCAGTAAACTCTAATCACCATGCTTCATCTGTAATGTCCACTAAAATAGAT]

[+] EMBL CD169326             [AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCAGCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCCCCATTGAATGATGCAATAAATGTAGAAGAAAATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGATAATCTTGGCGGATTATCACAACCTATCAATTCTGATCATTCAAATCATCATTGTTCTGTATCATTGGATTCTGCAGTAAACTCTAATCACCATGCTTCATCTGTAATGTCCACTAAAATAGAT]




>consensus_3717#0
AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCA
GCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCC
CCATTGAATGATGCAATAAATGTAGAAGAAAATGAAAATAATTTACATGTCCTTAATGAT
TCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGATAATCTT
GGCGGATTATCACAACCTATCAATTCTGATCATTCAAATCATCATTGTTCTGTATCATTG
GATTCTGCAGTAAACTCTAATCACCATGCTTCATCTGTAATGTCCACTAAAATAGAT

consensusID : consensus_3717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTAATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTTTTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCATGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT]

[+] EMBL CD152001             [AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTAATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTTTTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCATGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT]




>consensus_3717#1
AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCT
GTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTAATTCATATCCGGTA
TACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTTTTCAGTTTAATATG
GCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCATGACCACTACCCAT
TTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3717#0      AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCA 60
consensus_3717#1      ------------------------------------------------------------
                                                                                  

consensus_3717#0      GCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCC 120
consensus_3717#1      ------------------------------------------------------------
                                                                                  

consensus_3717#0      CCATTGAATGATGCAATAA-ATGTAGAAGAAA-ATGAAAATAATTTACATGTCCTTAATG 178
consensus_3717#1      --------------AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATG 46
                                    ***** ***** *** ** ***************************

consensus_3717#0      ATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGA---TA 235
consensus_3717#1      ATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTA 106
                      ******************************************************    **

consensus_3717#0      ATCTTGG--CGGATTATCAC--AACCTATCAATTCTGATC--ATTCAAATCATCATTGTT 289
consensus_3717#1      ATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTT 166
                      **       ***  **  **  *   *** * * ** **   **   * **   ******

consensus_3717#0      CT--GTATCAT----TGGATTCTG---CAGTAAACTCTA-------ATCACCATGCTTCA 333
consensus_3717#1      TTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCA 226
                       *  ** * **     * * ***     ****   * *        ** *  **  * **

consensus_3717#0      TCTGTAATGTCCACTAAAATAGAT-------------------------------- 357
consensus_3717#1      TGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT 282
                      *    * *  *** * ** *  **