cluster # 3720

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Schistosoma mansoni
cluster # 3720 cluster # 3720 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3720#0 length = 547 sequences # 1

consensus_3720#1 length = 405 sequences # 1

consensusID : consensus_3720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTTCACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAAAACGAATGTTTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTGAAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATCACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAGGATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATCAAGCTGTTATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAACCATTTCAACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACAAAGCTTTACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCC]

[+] EMBL CD127293             [AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTTCACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAAAACGAATGTTTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTGAAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATCACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAGGATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATCAAGCTGTTATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAACCATTTCAACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACAAAGCTTTACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCC]




>consensus_3720#0
AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTT
CACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAA
AACGAATGTTTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTGA
AAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATCA
CTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAGG
ATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATCA
AGCTGTTATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAACCATTTCAACT
GGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACAAAGC
TTTACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAA
CAATGCC

consensusID : consensus_3720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [AATTATCTGTACAAAAGCTGAATAAATGGGCCTGGCTCACTAGATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTGTGAAAATCATTCTTCGACCGACTAGACGAAACAAACAAAGCTTAACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCCCCAATACCTAGTGCATTGAATATTTTTGTTAGCCAGTTGGAACAAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGACTGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACATATAATCCAAGTTAAAGATCCACCTTTAAATATGGCTACAAATTCCTTAGAT]

[+] EMBL CD144659             [AATTATCTGTACAAAAGCTGAATAAATGGGCCTGGCTCACTAGATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTGTGAAAATCATTCTTCGACCGACTAGACGAAACAAACAAAGCTTAACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCTATATGGACCATAAACAATGCCCCAATACCTAGTGCATTGAATATTTTTGTTAGCCAGTTGGAACAAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGACTGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACATATAATCCAAGTTAAAGATCCACCTTTAAATATGGCTACAAATTCCTTAGAT]




>consensus_3720#1
AATTATCTGTACAAAAGCTGAATAAATGGGCCTGGCTCACTAGATCAAGATACCTGTCCG
CAACCGTTTGATCTGGAATGACAAACAGGATTGTGAAAATCATTCTTCGACCGACTAGAC
GAAACAAACAAAGCTTAACCTCCTTCATATTATTTACAAGCAGTACCATTCCCACAAGCT
ATATGGACCATAAACAATGCCCCAATACCTAGTGCATTGAATATTTTTGTTAGCCAGTTG
GAACAAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCA
CGACTGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACATATAATC
CAAGTTAAAGATCCACCTTTAAATATGGCTACAAATTCCTTAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3720#0      AGTCTCGATGAGTGGCTTGAATTCCTTTGAACTCAATGATGAGGATATTCCTCTGCACTT 60
consensus_3720#1      ------------------------------------------------------------
                                                                                  

consensus_3720#0      CACATCAGAGAGCTCGTATTTAATTGTTGCAGAGGGGGAGCAGGTTTTACTTCCTTGCAA 120
consensus_3720#1      -----------------AATTATCTGT-ACAAAAGCTGAATAAATGGGCCTGGCTCACTA 42
                                       * ***  ***  ** * *  **  *  *    **  **  * *

consensus_3720#0      AACGAATGT-TTTCTCTGAAGCGTTGGTATCTTGGTACAAAGATGATATTAGAATAGCTG 179
consensus_3720#1      GATCAAGATACCTGTCCGCAACCGTTTGATCTGGAATGACAAACAGGATTG-------TG 95
                       *  **  *   * ** * * *  *   **** *    * * *    ***        **

consensus_3720#0      AAAATCTTACTTTTTCTTTTCGTCTCCGGTCAGCTAGTCGCGAAGATGCTGGATATTATC 239
consensus_3720#1      AAAATCAT--------------TCTTCGACCGACTAGACG-AAACAAACAAAGCTTAACC 140
                      ****** *              *** **  *  **** **  ** *  *      * * *

consensus_3720#0      ACTGCGTAGTAAAAACTACTTATGGAGGGATTCGTAGCCAGAAAGTTAAGTTAGAGATAG 299
consensus_3720#1      TCC------TTCATATTATTTACAAGCAGTACCATTCCCACAA-GCTA---TATGGACCA 190
                       *       *  * * ** ***      *   * *  *** ** * **   **  **   

consensus_3720#0      GATATCTTGATCCACCATCCAAAATCAAAGCGCGTTCATTTATTGAAGTAACTCTAGATC 359
consensus_3720#1      TAAACAATGCCCCAATACCTAGTGC---ATTGAATATTTTTGTT--AGCCAGT-TGGAAC 244
                       * *   **  ***  * * *       *  *  *   *** **  **  * * * ** *

consensus_3720#0      AAGCTGT--TATAATTTGGCCTGGCTCACTAGATCAAGATAAACGTAAGCAAC-CATTTC 416
consensus_3720#1      AAGCTATAGTATTGCTTAATATTGATAAAGAAATGGATTCAAAAGTGATTAGGGCACGAC 304
                      ***** *  ***   **    * * * *  * **  *   *** ** *  *   **   *

consensus_3720#0      AACTGGAAAGACGAAATGGATTGTGGAAATCAGTATTCAACCCAATAGACGAAACAAACA 476
consensus_3720#1      TGATCAATGGCTATGGTAGAGCGAATAGTGAAGTATTCAGTCAGACACAT---ATAATCC 361
                         *  *  *      * **  *   *    ********  *  * * *    * ** * 

consensus_3720#0      AAGCTTTACCTCCTTCATATTATTTACAAGCAG-TACCATTCCCACAAGCTATATGGACC 535
consensus_3720#1      AAGTTAAAGATCCACC------TTTAAATATGGCTACAAATTCCTTAGAT---------- 405
                      *** *  *  ***  *      **** *    * *** * * **  *             

consensus_3720#0      ATAAACAATGCC 547
consensus_3720#1      ------------