cluster # 3737

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Schistosoma mansoni
cluster # 3737 cluster # 3737 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3737#0 length = 405 sequences # 1

consensus_3737#1 length = 405 sequences # 1

consensusID : consensus_3737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG]

[-] EMBL CD170996             [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG]




>consensus_3737#0
CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTAT
TGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATAT
CTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTAC
CGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGA
CTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCG
AACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATT
ACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG

consensusID : consensus_3737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC]

[+] EMBL CD183624             [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC]




>consensus_3737#1
TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATC
TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA
GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC
GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTC
TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT
GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG
TTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3737#0      ----------------------------CTAGCTA---AAAGGATTTCGGGAATCACATC 29
consensus_3737#1      TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATC 60
                                                  *** ***    * *******************

consensus_3737#0      TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 89
consensus_3737#1      TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 120
                      ************************************************************

consensus_3737#0      GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 149
consensus_3737#1      GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 180
                      ************************************************************

consensus_3737#0      GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTC 209
consensus_3737#1      GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTC 240
                      ********************************************************* **

consensus_3737#0      TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 269
consensus_3737#1      TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 300
                      ************************************************************

consensus_3737#0      GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 329
consensus_3737#1      GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 360
                      ************************************************************

consensus_3737#0      TTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAG 389
consensus_3737#1      TTACTTGCAACAACTAGTGGACGTAAGAAT-ACATAAGCCTTGCTC-------------- 405
                      ****************************** ***************              

consensus_3737#0      GATTCCAATACCACTG 405
consensus_3737#1      ----------------