cluster # 3769

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Schistosoma mansoni
cluster # 3769 cluster # 3769 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3769#0 length = 442 sequences # 1

consensus_3769#1 length = 314 sequences # 1

consensusID : consensus_3769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAATCATTATCGGCATCAGCTTGCTCACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTGAATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTTATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAACAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAATNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTGGCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTTTATCAAGTACCCAGTTGTGAATG]

[+] EMBL CD128760             [GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAATCATTATCGGCATCAGCTTGCTCACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTGAATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTTATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAACAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAATNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTGGCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTTTATCAAGTACCCAGTTGTGAATG]




>consensus_3769#0
GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAATCATTATCGGCATCAGCTTGCTCA
CATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTGA
ATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTTA
TTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAAC
AATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAAT
NTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTGG
CAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTTT
ATCAAGTACCCAGTTGTGAATG

consensusID : consensus_3769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTGAAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGTGAATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTTACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAACAACTTCTTTCGAATTTTCATATCTGTAGCATTCTTTGACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTTTATCGAGTAACCAA]

[-] EMBL CD122678             [TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTGAAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGTGAATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTTACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAACAACTTCTTTCGAATTTTCATATCTGTAGCATTCTTTGACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTTTATCGAGTAACCAA]




>consensus_3769#1
TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTGAAATTCATTGTGGAGGTCATGT
TCAAATTTCCAAAACCTATGTGAATTGCCTCATATTTATTCCTCATTTATTCTACCGATC
AACATCTCGTATGATGTAACTTACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGA
CACTGGTTTTTAGCATTTCAAACAACTTCTTTCGAATTTTCATATCTGTAGCATTCTTTG
ACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTT
TATCGAGTAACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3769#0      GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAA-TCATTATCGGCATCAGCTTGCTC 59
consensus_3769#1      ----------------------TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTG 38
                                            * ************ ******** ********** ** 

consensus_3769#0      ACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTG 119
consensus_3769#1      AAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGT----------------G 82
                      * ********* ************  *********** *****                *

consensus_3769#0      AATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTT 179
consensus_3769#1      AATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTT 142
                      ****** * * ***************************** *** ******* *******

consensus_3769#0      ATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAA 239
consensus_3769#1      ACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAA 202
                      * ** **** ************************* ****** *****************

consensus_3769#0      CAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAA 299
consensus_3769#1      CAACTTCTTTCGAATTTTCAT--------------------------------------A 224
                      *** ******* ***** ***                                      *

consensus_3769#0      TNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTG 359
consensus_3769#1      TCTGT--------------------------------------------AGCATTCTTTG 240
                      * * *                                            ** ********

consensus_3769#0      GCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTT 419
consensus_3769#1      ACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTT 300
                       *  ****************** ******* ********* ****** *** * ******

consensus_3769#0      TATCAAGTACCCAGTTGTGAATG 442
consensus_3769#1      TATCGAGTAACCAA--------- 314
                      **** **** ***