cluster # 3876

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Schistosoma mansoni
cluster # 3876 cluster # 3876 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3876#0 length = 138 sequences # 1

consensus_3876#1 length = 129 sequences # 1

consensusID : consensus_3876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [CTTTTGTATCATGATTATCGAGGTATCGTAGGTTATCATATCTCCCGAAACGGTTCTCCGATCTTATCATCAGTCCATTTTATCTAATCCGCAACCCAGCCCGCCGATGGCCNGGACAACGTTATCGAGAAACGTATC]

[+] EMBL AA952801             [CTTTTGTATCATGATTATCGAGGTATCGTAGGTTATCATATCTCCCGAAACGGTTCTCCGATCTTATCATCAGTCCATTTTATCTAATCCGCAACCCAGCCCGCCGATGGCCNGGACAACGTTATCGAGAAACGTATC]




>consensus_3876#0
CTTTTGTATCATGATTATCGAGGTATCGTAGGTTATCATATCTCCCGAAACGGTTCTCCG
ATCTTATCATCAGTCCATTTTATCTAATCCGCAACCCAGCCCGCCGATGGCCNGGACAAC
GTTATCGAGAAACGTATC

consensusID : consensus_3876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [TTTGTATCATGATTATCGAGGTATTGTAGGTTATCCTATCTCCCGAAACGGTTCTCCGATCTTATCATCAGTCCCATTCTACAACCCGCAACCCAGCCCAGCCGAGGCCGGACAACGCCACGAAGTAAC]

[+] EMBL AA917182             [TTTGTATCATGATTATCGAGGTATTGTAGGTTATCCTATCTCCCGAAACGGTTCTCCGATCTTATCATCAGTCCCATTCTACAACCCGCAACCCAGCCCAGCCGAGGCCGGACAACGCCACGAAGTAAC]




>consensus_3876#1
TTTGTATCATGATTATCGAGGTATTGTAGGTTATCCTATCTCCCGAAACGGTTCTCCGAT
CTTATCATCAGTCCCATTCTACAACCCGCAACCCAGCCCAGCCGAGGCCGGACAACGCCA
CGAAGTAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3876#0      CTTTTGTATCATGATTATCGAGGTATCGTAGGTTATCATATCTCCCGAAACGGTTCTCCG 60
consensus_3876#1      --TTTGTATCATGATTATCGAGGTATTGTAGGTTATCCTATCTCCCGAAACGGTTCTCCG 58
                        ************************ ********** **********************

consensus_3876#0      ATCTTATCATCAGTCCATTTTATCTAATCCGCAACCCAGCCCGCCGATGGCCNGGACAAC 120
consensus_3876#1      ATCTTATCATCAGTCC-CATTCTACAACCCGCAACCCAGCCCAGCCGAGGCCGG-ACAAC 116
                      ****************   ** *  ** **************  *   **** * *****

consensus_3876#0      GTTATCGAGAAACGTATC 138
consensus_3876#1      GCCACGAAGTAAC----- 129
                      *  *   ** ***