cluster # 3913

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Schistosoma mansoni
cluster # 3913 cluster # 3913 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3913#0 length = 531 sequences # 1

consensus_3913#1 length = 352 sequences # 1

consensusID : consensus_3913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATCTATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACCATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAGCACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAGTAATCCTTAAAATGATAACTAAAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGAGCCTGAATGAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAATCATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTCGTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCTCTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA]

[+] EMBL CD180603             [AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATCTATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACCATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAGCACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAGTAATCCTTAAAATGATAACTAAAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGAGCCTGAATGAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAATCATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTCGTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCTCTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA]




>consensus_3913#0
AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATC
TATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACC
ATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAG
CACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAG
TAATCCTTAAAATGATAACTAAAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGAGCC
TGAATGAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAATCATGGG
TATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTCGTACAA
TTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCTCTTCAG
CGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA

consensusID : consensus_3913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TTAAATTACAGGGACTTTTGCTAACAAGGTGAGTTTTGAACTTGAGTCACAAGCCAAACACATTATTCATCTAAAATGCTTATCGAGAACCTAATTAGATACGAAAGAATTATTGGTTCAGACATGCCAAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACATTTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAAAACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTTCGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT]

[+] EMBL CD178680             [TTAAATTACAGGGACTTTTGCTAACAAGGTGAGTTTTGAACTTGAGTCACAAGCCAAACACATTATTCATCTAAAATGCTTATCGAGAACCTAATTAGATACGAAAGAATTATTGGTTCAGACATGCCAAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACATTTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAAAACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTTCGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT]




>consensus_3913#1
TTAAATTACAGGGACTTTTGCTAACAAGGTGAGTTTTGAACTTGAGTCACAAGCCAAACA
CATTATTCATCTAAAATGCTTATCGAGAACCTAATTAGATACGAAAGAATTATTGGTTCA
GACATGCCAAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTC
CACATTTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCG
CATAAAACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCAC
TAGTTCGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3913#0      AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATC 60
consensus_3913#1      ------------------------------------------------TTAAATTACAGG 12
                                                                      *  ** * **  

consensus_3913#0      TATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACC 120
consensus_3913#1      GACTTTTGCTAACAAGGTGAGT-TTTGAACTTGAGTCACAAGCCAAACACATTATTCATC 71
                       *  *   ** *  * **  **      ***    *   ***          ****** *

consensus_3913#0      ATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAG 180
consensus_3913#1      TAAAATGCTTATCGAGAACCTAAT----TAGATACGAAAGAATTATTGGTTCAGACATGC 127
                           *  ****  * *   * **     * **    *   *** *** **** *  *  

consensus_3913#0      CACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAG 240
consensus_3913#1      C--AAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACAT 185
                      *  **  * ***  * *  **     *   *  *  *  *  *  **   *   *  ** 

consensus_3913#0      TAATCCTTAAAATGATAACTA---AAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGA 297
consensus_3913#1      TTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAA 245
                      *   *   ** **  *    *   **** *** *   ***      * *   **   * *

consensus_3913#0      GCCTGAAT---GAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAAT 354
consensus_3913#1      AACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTT 305
                        ****     *      * ** *** *****         ** **  *      *   *

consensus_3913#0      CATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTC 414
consensus_3913#1      CGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT------------- 352
                      * * **** ***  * * *  ** *     ***** *** * * ***             

consensus_3913#0      GTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCT 474
consensus_3913#1      ------------------------------------------------------------
                                                                                  

consensus_3913#0      CTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA 531
consensus_3913#1      ---------------------------------------------------------