cluster # 3920

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Schistosoma mansoni
cluster # 3920 cluster # 3920 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3920#0 length = 603 sequences # 1

consensus_3920#1 length = 508 sequences # 1

consensusID : consensus_3920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTTTGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTGTACTTGAATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAACCCCTAAGAAATTCAATGCAAATAATCATAACAGCAATTATTATGATGTTGATTACAAAATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAACACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATTATCAACAAATAATCATCATTTACAA]

[+] EMBL CD153423             [ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTTTGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTGTACTTGAATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAACCCCTAAGAAATTCAATGCAAATAATCATAACAGCAATTATTATGATGTTGATTACAAAATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAACACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATTATCAACAAATAATCATCATTTACAA]




>consensus_3920#0
ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATAT
TCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCAT
TTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTA
TTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTA
AAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTTTGAATGTGAAAATCAAT
AACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTGTACTTGAATTATTGATT
GCAATTAATGATTATTTTTTACCTAAACACAATATGAAAACCCCTAAGAAATTCAATGCA
AATAATCATAACAGCAATTATTATGATGTTGATTACAAAATGGAATCAAATGGTCGTTCA
TCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAACACCAATAAATCGATCAGAAACA
GCACCACATTTAAATGGTAATCATGANAATGGAATATTATCAACAAATAATCATCATTTA
CAA

consensusID : consensus_3920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTCTCTTCTACCATGTATAGATCTAGGTGATAATGGATCTGAACGAACTCTATACACTGTACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGATGGAGTTGGTGTTGGTGCTAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATCTATAGAATTTGACCATGGTAAATCAATTGTAGGA]

[-] EMBL CD169300             [CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTCTCTTCTACCATGTATAGATCTAGGTGATAATGGATCTGAACGAACTCTATACACTGTACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGATGGAGTTGGTGTTGGTGCTAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATCTATAGAATTTGACCATGGTAAATCAATTGTAGGA]




>consensus_3920#1
CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAAT
AAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAAC
TATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGG
ATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCC
GGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTC
TCTTCTACCATGTATAGATCTAGGTGATAATGGATCTGAACGAACTCTATACACTGTACT
TTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGATGGAGTTGGTGTTGGTGCTAATGA
ATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATCTATAGA
ATTTGACCATGGTAAATCAATTGTAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3920#0      -----------------ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAAT 43
consensus_3920#1      CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAAT 60
                                       *******************************************

consensus_3920#0      AAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAAC 103
consensus_3920#1      AAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAAC 120
                      ************************************************************

consensus_3920#0      TATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGG 163
consensus_3920#1      TATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGG 180
                      ************************************************************

consensus_3920#0      ATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCC 223
consensus_3920#1      ATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCC 240
                      ************************************************************

consensus_3920#0      GGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTT 283
consensus_3920#1      GGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTC 300
                      ***************************************** *     **** ** * * 

consensus_3920#0      TGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTG 343
consensus_3920#1      T--CTTCTACCATGTATAGA--TCTAGGTGATAATGGATCTGAACGAACTCTATACACTG 356
                      *   *   *  **  ***    ** *  ***  **  *    ** *   *    * ****

consensus_3920#0      TACTTG--AATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAAC 401
consensus_3920#1      TACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGA--TGGAGTTGGTGTTGGTGC 414
                      *****    **  * ** *   *  * *  *** ** * *  *  *     * *     *

consensus_3920#0      CCCTAAGAAATTCAATG-CAAATAATCATAACAGCAATTATTATGATGTTGATTACAAA- 459
consensus_3920#1      TAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATC 474
                         * *   **   * *   *****   *  *    **** *** ** *  *  ** *  

consensus_3920#0      -ATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAAC 518
consensus_3920#1      TATAGAATTTGACCATGGTAAATCAAT-TGTAGGA------------------------- 508
                       ** ****   *   * **  ****   ** ** *                         

consensus_3920#0      ACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATT 578
consensus_3920#1      ------------------------------------------------------------
                                                                                  

consensus_3920#0      ATCAACAAATAATCATCATTTACAA 603
consensus_3920#1      -------------------------