cluster # 3976

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Schistosoma mansoni
cluster # 3976 cluster # 3976 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3976#0 length = 402 sequences # 1

consensus_3976#1 length = 308 sequences # 1

consensusID : consensus_3976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAATTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCACTTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA]

[+] EMBL AI975628             [ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAATTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCACTTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA]




>consensus_3976#0
ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTC
CAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGT
AAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTTCTAA
AGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCT
ATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAATTCC
GTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCACTTGT
TTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA

consensusID : consensus_3976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACCTGTAACAAGAAACATATTAGATATGGATGTATGTCGACAAAATTATTTT]

[+] EMBL AA999591             [TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACCTGTAACAAGAAACATATTAGATATGGATGTATGTCGACAAAATTATTTT]




>consensus_3976#1
TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATT
TTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCA
CAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTT
CTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTG
AGCTATTTGGGATGGTACCTGTAACAAGAAACATATTAGATATGGATGTATGTCGACAAA
ATTATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3976#0      ----ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATT 56
consensus_3976#1      TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATT 60
                          ********** * *******************************************

consensus_3976#0      TTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCA 116
consensus_3976#1      TTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCA 120
                      ************************************************************

consensus_3976#0      CAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTT 176
consensus_3976#1      CAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTT 180
                      *********************** ***************************** ******

consensus_3976#0      CTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTG 236
consensus_3976#1      CTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTG 240
                      ************************************************************

consensus_3976#0      AGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAA 296
consensus_3976#1      AGCTATTTGGGATGGTACCTGTAACAAGA---AACATATTAGATATGGATGTATGTCGAC 297
                      ****************** *  ****      *****  *    * *   *    **** 

consensus_3976#0      TTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCAC 356
consensus_3976#1      AAAATTATTTT------------------------------------------------- 308
                           **** *                                                 

consensus_3976#0      TTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA 402
consensus_3976#1      ----------------------------------------------