cluster # 3997

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Schistosoma mansoni
cluster # 3997 cluster # 3997 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3997#0 length = 280 sequences # 1

consensus_3997#1 length = 180 sequences # 1

consensusID : consensus_3997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [TCCCCTCTTTGCTTCGTAAGTCTTCCAGGAGGCCTTGAAAGAAGGACAGAGAGACCACCATATGTGTTTAGACTCCACCAAAGGGCAGCGTGTGACCTTGCAATACTCCCCAAGCCGTTCTCCCTTCCGGACATAGGAAACGTTTAAGCCCACCCTATGGGTTTAAAGCAGCCATTAAACTATGGTACCAAATACGTCTCTGCCTGGCTACGTTCTAGTCTGGTTCTCTGCTTGAACCCTCACACATACAAAGGCTGCTTGCCTGAAGGTGTCTGGTGTC]

[+] EMBL AI014216             [TCCCCTCTTTGCTTCGTAAGTCTTCCAGGAGGCCTTGAAAGAAGGACAGAGAGACCACCATATGTGTTTAGACTCCACCAAAGGGCAGCGTGTGACCTTGCAATACTCCCCAAGCCGTTCTCCCTTCCGGACATAGGAAACGTTTAAGCCCACCCTATGGGTTTAAAGCAGCCATTAAACTATGGTACCAAATACGTCTCTGCCTGGCTACGTTCTAGTCTGGTTCTCTGCTTGAACCCTCACACATACAAAGGCTGCTTGCCTGAAGGTGTCTGGTGTC]




>consensus_3997#0
TCCCCTCTTTGCTTCGTAAGTCTTCCAGGAGGCCTTGAAAGAAGGACAGAGAGACCACCA
TATGTGTTTAGACTCCACCAAAGGGCAGCGTGTGACCTTGCAATACTCCCCAAGCCGTTC
TCCCTTCCGGACATAGGAAACGTTTAAGCCCACCCTATGGGTTTAAAGCAGCCATTAAAC
TATGGTACCAAATACGTCTCTGCCTGGCTACGTTCTAGTCTGGTTCTCTGCTTGAACCCT
CACACATACAAAGGCTGCTTGCCTGAAGGTGTCTGGTGTC

consensusID : consensus_3997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [CGCTCCCCTTCGCACATAGGAAACGTAAAGCCCACCCTATGGTTTAAAGCAGCCATTAAACTATGGTCACCAAATACGTCTGCTGCGCTGGCTGACGTTCTGCAGTGCTGGTCCGACTGGCGTGCCACCCTACATATACATACAGGAAGGTCGTCTCGGCCAGATATGTCGGGTCGGTCT]

[+] EMBL AI413075             [CGCTCCCCTTCGCACATAGGAAACGTAAAGCCCACCCTATGGTTTAAAGCAGCCATTAAACTATGGTCACCAAATACGTCTGCTGCGCTGGCTGACGTTCTGCAGTGCTGGTCCGACTGGCGTGCCACCCTACATATACATACAGGAAGGTCGTCTCGGCCAGATATGTCGGGTCGGTCT]




>consensus_3997#1
CGCTCCCCTTCGCACATAGGAAACGTAAAGCCCACCCTATGGTTTAAAGCAGCCATTAAA
CTATGGTCACCAAATACGTCTGCTGCGCTGGCTGACGTTCTGCAGTGCTGGTCCGACTGG
CGTGCCACCCTACATATACATACAGGAAGGTCGTCTCGGCCAGATATGTCGGGTCGGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3997#0      TCCCCTCTTTGCTTCGTAAGTCTTCCAGGAGGCCTTGAAAGAAGGACAGAGAGACCACCA 60
consensus_3997#1      ------------------------------------------------------------
                                                                                  

consensus_3997#0      TATGTGTTTAGACTCCACCAAAGGGCAGCGTGTGACCTTGCAATACTCCCCAAGCCGTTC 120
consensus_3997#1      ---------------------------------------------------------CGC 3
                                                                                 *

consensus_3997#0      TCCCTTCCGGACATAGGAAACGTTTAAGCCCACCCTATGGGTTTAAAGCAGCCATTAAAC 180
consensus_3997#1      TCCCCTTCGCACATAGGAAACGTA-AAGCCCACCCTATGG-TTTAAAGCAGCCATTAAAC 61
                      **** * ** *************  *************** *******************

consensus_3997#0      TATGGT-ACCAAATACGTCT-CTGC-CTGGCT-ACGTTCT--AGT-CTGGTTC--TCTGC 231
consensus_3997#1      TATGGTCACCAAATACGTCTGCTGCGCTGGCTGACGTTCTGCAGTGCTGGTCCGACTGGC 121
                      ****** ************* **** ****** *******  *** ***** *     **

consensus_3997#0      TTGAACCCTCACACATACA------AAGGCTG-CTTGCCTGAAGGTGTCTGGT--GTC- 280
consensus_3997#1      GTGCCACCCTACATATACATACAGGAAGGTCGTCTCGGCCAGATATGTCGGGTCGGTCT 180
                       **   **  *** *****      ****  * ** * *   *  **** ***  ***