cluster # 4000

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Schistosoma mansoni
cluster # 4000 cluster # 4000 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4000#0 length = 328 sequences # 1

consensus_4000#1 length = 231 sequences # 1

consensusID : consensus_4000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTACTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCTCGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAACACGCTCACATTCTTCTTGAATGGTGCATTGAGCGTTTGAACGTGAAAATCTACAACCACGATCCTTGCTATCATTTCGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA]

[+] EMBL CD179426             [CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTACTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCTCGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAACACGCTCACATTCTTCTTGAATGGTGCATTGAGCGTTTGAACGTGAAAATCTACAACCACGATCCTTGCTATCATTTCGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA]




>consensus_4000#0
CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTA
CTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCT
CGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAA
CACGCTCACATTCTTCTTGAATGGTGCATTGAGCGTTTGAACGTGAAAATCTACAACCAC
GATCCTTGCTATCATTTCGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTT
AGTTTGTGAAATTTCCAGGCTCCTGTCA

consensusID : consensus_4000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [TGAGAACTCAGTACTGTGACCTAACACTAGTCGTTCAGTGCAATGAACACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAACCACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCGTCGAAGAAGTATAATAGAGGCTTTCAGATACCTGT]

[-] EMBL AA917148             [TGAGAACTCAGTACTGTGACCTAACACTAGTCGTTCAGTGCAATGAACACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAACCACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCGTCGAAGAAGTATAATAGAGGCTTTCAGATACCTGT]




>consensus_4000#1
TGAGAACTCAGTACTGTGACCTAACACTAGTCGTTCAGTGCAATGAACACGCTCACATTC
TTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAACCACGATCCTTCGT
ATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTG
AAATTTCCAGGCTCCGTCGAAGAAGTATAATAGAGGCTTTCAGATACCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4000#0      CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTA 60
consensus_4000#1      ------------------------------------------------------------
                                                                                  

consensus_4000#0      CTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCT 120
consensus_4000#1      ------------------------------------------------------------
                                                                                  

consensus_4000#0      CGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAA 180
consensus_4000#1      -----------TGAGAACTCAGTACTGTG-ACCTAACACTAGTCGTTCAGTGCAATGAA- 47
                                  *** *  *  *** *** ******************    ******* 

consensus_4000#0      CACGCTCACATTCTTCTTGAATGGT-GCATTGAGC--GTTTGAACGTGAAAATCTACAAC 237
consensus_4000#1      CACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAAC 107
                      ************************* * *****    ***********************

consensus_4000#0      CACGATCCTTGCTATC-ATTTCG-TAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCAT 295
consensus_4000#1      CACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCAT 167
                      **********  **** ****** ************************************

consensus_4000#0      CCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA--------------------------- 328
consensus_4000#1      CCCTTAGTTTGTGAAATTTCCAGGCTCC-GTCGAAGAAGTATAATAGAGGCTTTCAGATA 226
                      **************************** ***                            

consensus_4000#0      -----
consensus_4000#1      CCTGT 231