cluster # 404

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Schistosoma mansoni
cluster # 404 cluster # 404 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_404#0 length = 636 sequences # 1

consensus_404#1 length = 597 sequences # 1

consensusID : consensus_404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTAGTTCGGAGAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACGGGGTGACGTGCCGGTCACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGATGCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATTGTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCCCGGAACGTGATCCACGCCCGCTCGGCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTACGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGTGCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC]

[+] EMBL CD080924             [CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTAGTTCGGAGAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACGGGGTGACGTGCCGGTCACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGATGCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATTGTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCCCGGAACGTGATCCACGCCCGCTCGGCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTACGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGTGCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC]




>consensus_404#0
CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTA
GTTCGGAGAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACGGGGTGACGTGCCGGTCAC
GGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGATGCGC
TGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATTGTCG
TCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCCCGGAACGTGATC
CACGCCCGCTCGGCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTACGCAAC
GTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGTGCAGAA
ACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGT
GGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCAGCCTGC
CGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCG
GTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC

consensusID : consensus_404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCGCCTCCATCTGGTTNACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATCGAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAAGCCATTGAGGACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGACGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCGAGTCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGACGCCGTGACCAGCCGCATCGGTCCGGACGCTGTCCGCGACCTGCGCAGGCGGCAGCGTCAGGAACATGCCGGTGACGCCGGTGTCGAGAAGCGCGCGCCCGCAGACGCCCGGCTCCCGCCCGTCGACGGTGATGCAAGCGGGGACGCCAAGCCAGTCCCCCGGTACGTGCGGGTGCGGATCGAGCTTCACGAAGCGGAAGCGGCC]

[-] EMBL CD074758             [CCGCCTCCATCTGGTTNACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATCGAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAAGCCATTGAGGACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGACGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCGAGTCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGACGCCGTGACCAGCCGCATCGGTCCGGACGCTGTCCGCGACCTGCGCAGGCGGCAGCGTCAGGAACATGCCGGTGACGCCGGTGTCGAGAAGCGCGCGCCCGCAGACGCCCGGCTCCCGCCCGTCGACGGTGATGCAAGCGGGGACGCCAAGCCAGTCCCCCGGTACGTGCGGGTGCGGATCGAGCTTCACGAAGCGGAAGCGGCC]




>consensus_404#1
CCGCCTCCATCTGGTTNACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGG
GGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATCGAAC
CGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCT
GCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAAGCCATTGAG
GACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGACGATGCGCTC
GGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCGAGTCGCCGAA
GCGGAAGTTCAGGCGCGTTCCGGACCGGAGGACGCCGTGACCAGCCGCATCGGTCCGGAC
GCTGTCCGCGACCTGCGCAGGCGGCAGCGTCAGGAACATGCCGGTGACGCCGGTGTCGAG
AAGCGCGCGCCCGCAGACGCCCGGCTCCCGCCCGTCGACGGTGATGCAAGCGGGGACGCC
AAGCCAGTCCCCCGGTACGTGCGGGTGCGGATCGAGCTTCACGAAGCGGAAGCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_404#0      CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTA 60
consensus_404#1      --CCGCCTCCATCTGGTTNACGGGCTG--GTTGCAATCCGCTTGCGCCCCGAACCCAGCT 56
                         ***   **  **     **** *  *       ** *   *  * ** **   *  

consensus_404#0      GTTCGGA-GAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACG-GGGTGACGTGCCGGTC 118
consensus_404#1      GTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATC 116
                     **  *** **** ***   *     ** *** ** * *  **  *** ***  *    **

consensus_404#0      --ACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGAT 176
consensus_404#1      GAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCA---TCGATCGTCGGCCGCCGAAA 173
                       ** ****   ***  * * **** ** * *  *     *    ** * *   * * * 

consensus_404#0      GCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATT 236
consensus_404#1      GCG-TGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAA- 231
                     *** **  ***   ***  ***    **              * *     *** ** *  

consensus_404#0      GTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCC-CGGAACG 295
consensus_404#1      GCCATTGAG-GACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGA 290
                     * * * * * * **    *     *   * *    ** ***   ** * *     **   

consensus_404#0      TGATCCACGCCCGCTCG-GCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTA 354
consensus_404#1      CGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCG 350
                      *** * * *  ** ** ***** *   *    ***** * **  ***   **   **  

consensus_404#0      CGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGT 414
consensus_404#1      AG-----TCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGA-----CGCCGTGA 400
                      *     ***           ******    *   **  ***   **      ***  * 

consensus_404#0      GCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCC 474
consensus_404#1      CCAG----CCGCATCGGTCCGGAC-----GCTGTCCGCGACCTGCGCAGGCGGCAGCGTC 451
                      ***    **** **  ** **       ****   ** * * **    **  *     *

consensus_404#0      AGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCA 534
consensus_404#1      AGGAACATGCCGGTGACGCCGG-TGTCGAGAAGCGCGCGCCCG---CAGACGCCCGGCT- 506
                     **      *   * ** ** ** ** *** *** **   * **     ** *   ***  

consensus_404#0      GCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATA 594
consensus_404#1      -CCCGCCCGTCGACGGTGAT--GCAAGCGGGGACGC------CAAGCCAGTCCCCCGGTA 557
                      ** *** ***  ** *  *  **   **    **          **     **    **

consensus_404#0      TCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC 636
consensus_404#1      CGTGCGGGTGCGG--ATCGAGCTTCACGAAGCGGAAGCGGCC 597
                        ****  *  *   *  **     ******    * ** *