cluster # 4076

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4076 cluster # 4076 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4076#0 length = 385 sequences # 1

consensus_4076#1 length = 371 sequences # 1

consensusID : consensus_4076#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [ATTCTAGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTTCATTCTGTTTATCATTTACTCCCANAACTCAGCTTCTAAATTTCTCATAACCTTTATCTCACTAATTCATATTTTCTTCTACCACGCCAAATCTTTTCTATTACNACTGATNCTGTTACTACCACCNCTATTCTGGGAGTTGACCTGACAATTTCATTCCTTTGTGCTAATGGGGTATGAAAACATGAACCGATGTATATACGTNCCAGGTTCCNCGTCGTGACTGACTGGCTATCATTTACTTATCGTCCTCTTCGTTTAGATAATCATTATTACTATGTCTTTCATCTATTCNCTTTTTCTATCTCATAATTTGGTTTAATGTT]

[+] EMBL AI110937             [ATTCTAGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTTCATTCTGTTTATCATTTACTCCCANAACTCAGCTTCTAAATTTCTCATAACCTTTATCTCACTAATTCATATTTTCTTCTACCACGCCAAATCTTTTCTATTACNACTGATNCTGTTACTACCACCNCTATTCTGGGAGTTGACCTGACAATTTCATTCCTTTGTGCTAATGGGGTATGAAAACATGAACCGATGTATATACGTNCCAGGTTCCNCGTCGTGACTGACTGGCTATCATTTACTTATCGTCCTCTTCGTTTAGATAATCATTATTACTATGTCTTTCATCTATTCNCTTTTTCTATCTCATAATTTGGTTTAATGTT]




>consensus_4076#0
ATTCTAGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTTC
ATTCTGTTTATCATTTACTCCCANAACTCAGCTTCTAAATTTCTCATAACCTTTATCTCA
CTAATTCATATTTTCTTCTACCACGCCAAATCTTTTCTATTACNACTGATNCTGTTACTA
CCACCNCTATTCTGGGAGTTGACCTGACAATTTCATTCCTTTGTGCTAATGGGGTATGAA
AACATGAACCGATGTATATACGTNCCAGGTTCCNCGTCGTGACTGACTGGCTATCATTTA
CTTATCGTCCTCTTCGTTTAGATAATCATTATTACTATGTCTTTCATCTATTCNCTTTTT
CTATCTCATAATTTGGTTTAATGTT

consensusID : consensus_4076#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [ATTCTAGGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTTCATTCTGTTTATCATTTACTCCCAGAACTCAGCTTCTAAATTTCTCATAACCTTTATCTCACTAATTCATATTTTCTTCTACAACGCCAAATCTTTTCTATTACGACTGATACTGTTACTACCACCACTATTCTGGGAGTTGACCTGACAATTCCTNCCTTNTGTGNTGGGGGGNTNNAAAAANNTAAACCGATTTTTATNNTTNCCAGGTNCCACTTCGATGACTGACTGGCTATCATTTACTTATCGTTCTCTTCGTTTAGATAATCATTATTACTATNTCTTTCATCTATNCACTTTTNCTATCTCAT]

[+] EMBL AI111146             [ATTCTAGGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTTCATTCTGTTTATCATTTACTCCCAGAACTCAGCTTCTAAATTTCTCATAACCTTTATCTCACTAATTCATATTTTCTTCTACAACGCCAAATCTTTTCTATTACGACTGATACTGTTACTACCACCACTATTCTGGGAGTTGACCTGACAATTCCTNCCTTNTGTGNTGGGGGGNTNNAAAAANNTAAACCGATTTTTATNNTTNCCAGGTNCCACTTCGATGACTGACTGGCTATCATTTACTTATCGTTCTCTTCGTTTAGATAATCATTATTACTATNTCTTTCATCTATNCACTTTTNCTATCTCAT]




>consensus_4076#1
ATTCTAGGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTT
CATTCTGTTTATCATTTACTCCCAGAACTCAGCTTCTAAATTTCTCATAACCTTTATCTC
ACTAATTCATATTTTCTTCTACAACGCCAAATCTTTTCTATTACGACTGATACTGTTACT
ACCACCACTATTCTGGGAGTTGACCTGACAATTCCTNCCTTNTGTGNTGGGGGGNTNNAA
AAANNTAAACCGATTTTTATNNTTNCCAGGTNCCACTTCGATGACTGACTGGCTATCATT
TACTTATCGTTCTCTTCGTTTAGATAATCATTATTACTATNTCTTTCATCTATNCACTTT
TNCTATCTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4076#0      ATTCTAG-ATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTT 59
consensus_4076#1      ATTCTAGGATAGGGAAGATAACTCAATTCTGATAAAGTCTTAATCATGTTGGGATTTTTT 60
                      ******* ****************************************************

consensus_4076#0      CATTCTGTTTATCATTTACTCCCANAACTCAGCTTCTAAATTTCTCATAACCTTTATCTC 119
consensus_4076#1      CATTCTGTTTATCATTTACTCCCAGAACTCAGCTTCTAAATTTCTCATAACCTTTATCTC 120
                      ************************ ***********************************

consensus_4076#0      ACTAATTCATATTTTCTTCTACCACGCCAAATCTTTTCTATTACNACTGATNCTGTTACT 179
consensus_4076#1      ACTAATTCATATTTTCTTCTACAACGCCAAATCTTTTCTATTACGACTGATACTGTTACT 180
                      ********************** ********************* ****** ********

consensus_4076#0      ACCACCNCTATTCTGGGAGTTGACCTGACAATTTCATTCCTTTGTGCTAATGGGGTATGA 239
consensus_4076#1      ACCACCACTATTCTGGGAGTTGACCTGACAATTCCTNCCTTNTGTGNTGGGGGGNTNNAA 240
                      ****** ************************** *   * * **** *   *** *   *

consensus_4076#0      AAACATGAACCGATGTATATACGTNCCAGGTTCCNCGTCG-TGACTGACTGGCTATCATT 298
consensus_4076#1      AAANNTAAACCGATTTTTATNNTTNCCAGGTNCCACTTCGATGACTGACTGGCTATCATT 300
                      ***  * ******* * ***   ******** ** * *** *******************

consensus_4076#0      TACTTATCGTCCTCTTCGTTTAGATAATCATTATTACTATGTCTTTCATCTATTCNCTTT 358
consensus_4076#1      TACTTATCGTTCTCTTCGTTTAGATAATCATTATTACTATNTCTTTCATCTATNCACTTT 360
                      ********** ***************************** ************ * ****

consensus_4076#0      TTCTATCTCATAATTTGGTTTAATGTT 385
consensus_4076#1      TNCTATCTCAT---------------- 371
                      * *********