cluster # 4090

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4090 cluster # 4090 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4090#0 length = 361 sequences # 1

consensus_4090#1 length = 143 sequences # 1

consensusID : consensus_4090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGACAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTTATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAATTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATATTGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGATGCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTCCT]

[+] EMBL SM4141               [CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGACAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTTATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAATTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATATTGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGATGCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTCCT]




>consensus_4090#0
CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGA
CAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTT
ATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAA
TTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATATT
GATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGATG
CAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTCC
T

consensusID : consensus_4090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTATTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATATTGATGATTTCTTTTATTTATGAATTAATCA]

[-] EMBL CD179993             [TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTATTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATATTGATGATTTCTTTTATTTATGAATTAATCA]




>consensus_4090#1
TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTATTTGGTA
ATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATATTGATGAT
TTCTTTTATTTATGAATTAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4090#0      CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGA 60
consensus_4090#1      ------------------------------------------------------------
                                                                                  

consensus_4090#0      CAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTT 120
consensus_4090#1      ------------------------------------------------------------
                                                                                  

consensus_4090#0      ATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAA 180
consensus_4090#1      -------TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTA 53
                             *************** ************* *******************   *

consensus_4090#0      TT-GGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATAT 239
consensus_4090#1      TTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATAT 113
                      ** ***************************************** ***************

consensus_4090#0      TGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGAT 299
consensus_4090#1      TGATGATTTCTT-TTATTTATGAATTAATCA----------------------------- 143
                      ******* ****   ******** ***  **                             

consensus_4090#0      GCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTC 359
consensus_4090#1      ------------------------------------------------------------
                                                                                  

consensus_4090#0      CT 361
consensus_4090#1      --