cluster # 4100

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Schistosoma mansoni
cluster # 4100 cluster # 4100 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4100#0 length = 603 sequences # 2

consensus_4100#1 length = 337 sequences # 1

consensusID : consensus_4100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCAGTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCTTAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGTAATCAAGTTTTTCCTGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAGTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTCTTCAA]

[+] EMBL CD178610             [GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCAGTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCTTAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGTAATCAAGTTTTTCCTGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAG                                                                ]
[+] EMBL CD065606             [                                                                                                                                                                                                     TGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAGTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTCTTCAA]




>consensus_4100#0
GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCA
GTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCT
TAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGTAATCAAGTTTTTCCTGGTTCCAA
GGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTG
TGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCG
GTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCAT
TTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACA
TTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAA
GGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAGT
GCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTCTT
CAA

consensusID : consensus_4100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA]

[-] EMBL CD097206             [CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA]




>consensus_4100#1
CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCCAA
GGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGGTG
TGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCG
GTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCAT
TTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACA
TTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4100#0      GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCA 60
consensus_4100#1      ------------------------------------------------------------
                                                                                  

consensus_4100#0      GTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCT 120
consensus_4100#1      ------------------------------------------------------------
                                                                                  

consensus_4100#0      TAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGT--AATCAAGTTTTTCCTGGTTCC 178
consensus_4100#1      --CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCC 58
                         *  *   * ** ***     *  *   * * * *  *** *    * *   ******

consensus_4100#0      AAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAG 238
consensus_4100#1      AAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGG 118
                      ********************************************************** *

consensus_4100#0      TGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAG 298
consensus_4100#1      TGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAG 178
                      ********** *************************************************

consensus_4100#0      CGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACC 358
consensus_4100#1      CGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACC 238
                      ************************************************************

consensus_4100#0      ATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTA 418
consensus_4100#1      ATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTA 298
                      ************************************************************

consensus_4100#0      CATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTT 478
consensus_4100#1      CATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA--------------------- 337
                      *************************** ***********                     

consensus_4100#0      AAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTA 538
consensus_4100#1      ------------------------------------------------------------
                                                                                  

consensus_4100#0      GTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTC 598
consensus_4100#1      ------------------------------------------------------------
                                                                                  

consensus_4100#0      TTCAA 603
consensus_4100#1      -----