cluster # 4103

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Schistosoma mansoni
cluster # 4103 cluster # 4103 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4103#0 length = 793 sequences # 2

consensus_4103#1 length = 102 sequences # 1

consensusID : consensus_4103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence

                              [CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAATATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGAAGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAGCAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTCTCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAATTCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCAACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCTCCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGTCAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTGCCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTATCCCAAGACCCCCA]

[+] EMBL CD082309             [CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAATATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGAAGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAGCAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTCTCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAATTCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCAACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCTCCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGTCAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTA                                                                                                                        ]
[+] EMBL CD181770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTTTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTGCCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTATCCCAAGACCCCCA]




>consensus_4103#0
CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAA
TATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGA
AGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAG
CAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTC
TCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAAT
TCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCA
ACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCT
CCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGT
CAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTAT
TGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACT
GGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATG
ACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTG
CCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTAT
CCCAAGACCCCCA

consensusID : consensus_4103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTCGATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGATCT]

[+] EMBL CD120619             [TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTCGATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGATCT]




>consensus_4103#1
TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTCGATTCAACATTTGTTTTATT
GCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4103#0      CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAA 60
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      TATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGA 120
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      AGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAG 180
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      CAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTC 240
consensus_4103#1      --------------------TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTC 40
                                          ****  ****  *    *   *** * ***       ***

consensus_4103#0      TCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAAT 300
consensus_4103#1      G-ATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGA 99
                        *******  * **     * **  **  ** **   *  * * * *** *  *  *  

consensus_4103#0      TCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCA 360
consensus_4103#1      TCT--------------------------------------------------------- 102
                      **                                                          

consensus_4103#0      ACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCT 420
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      CCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGT 480
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      CAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTAT 540
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      TGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACT 600
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      GGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATG 660
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      ACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTG 720
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      CCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTAT 780
consensus_4103#1      ------------------------------------------------------------
                                                                                  

consensus_4103#0      CCCAAGACCCCCA 793
consensus_4103#1      -------------