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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence
[GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCGTACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGATGTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAACTTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTATATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCCTAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTGCTTTATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACCCAATAGGNAAAAATTCCGGGAACGGGCTCGTAACATTAAAATCGGGGGATT]
[+] EMBL CD080026 [GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCGTACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGATGTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAACTTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTATATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCCTAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTGCTTTATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACCCAATAGGNAAAAATTCCGGGAACGGGCTCGTAACATTAAAATCGGGGGATT]
[-] EMBL CD165084 [ AAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGAAGTATGGTCACTTGGTCTAAGTGTGCTCGAAATAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTA ]
consensusID : consensus_4114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[GCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAATATCCGTTGTTATTACTGATAATGATGATGTATTAACTTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTATATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTCCGTTTTTTTAATTTCCAAATTTGAAGAGATTTTCTTACTCCTTATTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACAGCCTTGTTGTTATTGCTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAATTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGTAATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATCTTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGAAGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT]
[-] EMBL CD074994 [GCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAATATCCGTTGTTATTACTGATAATGATGATGTATTAACTTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTATATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTCCGTTTTTTTAATTTCCAAATTTGAAGAGATTTTCTTACTCCTTATTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACAGCCTTGTTGTTATTGCTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAATTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGTAATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATCTTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGAAGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4114#0 GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCG 60
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 TACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACAT 120
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 CGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGAT 180
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 TTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCT 240
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 TATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGAT 300
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 GTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAA 360
consensus_4114#1 ------------------------------------------------------------
consensus_4114#0 TCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCA 420
consensus_4114#1 --------------------------------------------------------GCCA 4
****
consensus_4114#0 GAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAAC 480
consensus_4114#1 GAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAAC 64
************************************** ********************
consensus_4114#0 AAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGAC 540
consensus_4114#1 AAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGAC 124
************************************************************
consensus_4114#0 GCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAA 600
consensus_4114#1 GCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAA 184
************************************************************
consensus_4114#0 AAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAAC 660
consensus_4114#1 AAATGTTAATGATTCATTATAAT-ATCCGTTGTTATTACTGATAATGATGATGTATTAAC 243
********************** ****************** ****************
consensus_4114#0 TTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTAT 720
consensus_4114#1 TTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTAT 303
******* ********************* *********************** *****
consensus_4114#0 ATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCT 780
consensus_4114#1 ATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCT 363
******** ***************************************************
consensus_4114#0 ATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCC 840
consensus_4114#1 ATATGTGATACATTCCG--TTTTTTTAATTTCCAAATTTG-AAGAGATTTTCTTACTCCT 420
************** * ************** **** ******************
consensus_4114#0 TAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTG 900
consensus_4114#1 TA-TTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACA-GCCTTGTTG-TTATTG 477
** ** * ****** ***** ******* ************ ********* ******
consensus_4114#0 CTTT-ATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TAAAA 954
consensus_4114#1 CTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAA 537
**** ****** ** ****** ** **
consensus_4114#0 ACCCAATAGGN----AAAAATTCCGGGAACGGGCTCGT--AACATTAAAATCGGGGGATT 1008
consensus_4114#1 TTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGT 597
* *** * ** *** * * * ***** *********** * *
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 AATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATC 657
consensus_4114#0 ------------------------------------------------------------
consensus_4114#1 TTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGA 717
consensus_4114#0 ----------------------------------------------------------
consensus_4114#1 AGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT 775
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||