cluster # 4116

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Schistosoma mansoni
cluster # 4116 cluster # 4116 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4116#0 length = 747 sequences # 1

consensus_4116#1 length = 442 sequences # 1
consensus_4116#2 length = 411 sequences # 1

consensusID : consensus_4116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTCCAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCCTGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACATGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAATTGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAATGGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTGTATATGATATGTTTAAGCCTAATTAATATATTCT]

[+] EMBL CD081694             [GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTCCAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCCTGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACATGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAATTGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAATGGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTGTATATGATATGTTTAAGCCTAATTAATATATTCT]




>consensus_4116#0
GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATTTATATCG
AATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAA
AAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAG
AAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAA
TGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTA
CAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAAT
TTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTCCAAAAAG
AAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCCTGATAAA
CATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACATGGTAAA
CAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAATTGAATTA
AATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAATGGAGATT
AATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTGTATATGA
TATGTTTAAGCCTAATTAATATATTCT

consensusID : consensus_4116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTTCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTG]

[+] EMBL CD188675             [AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATTTATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTTCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTG]




>consensus_4116#1
AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATT
TATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTT
TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT
ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT
GAATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCA
AAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACA
TTTTTACATCAGAAAAATCTTTTCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAA
CATTCTGCCATAAATATATTTG

consensusID : consensus_4116#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [TATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTCCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTGGTTTAATTGTTATA]

[-] EMBL CD187686             [TATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTCCGAAAGACCTCCGATGGCTGTACAAATATTTATGAAACATTCTGCCATAAATATATTTGGTTTAATTGTTATA]




>consensus_4116#2
TATTCAAGTATTTGGACGAAAGAAAGTTTCTCAAAAAGATGTTTTGAAGGTATTAGTTCA
GATTCTATCTAGATATGATTTAGTTGTTATTCAAGAAATTCGTGATGCCAGAGACACTTC
ATTCAAACACCTCGTCAATGAACTAAATGAGTTAATGCTAAAATTATTCAATATGGACTT
AAACTGCGTATTTTTAGATATGCGGGTGGTATTTACAAATCGATATTGAGTGAAAAACTG
GGTAGGACTCGTTCAAAAGAACAATATGGATTAATTTACAGGCCTACTCTATTTACTATT
GGAGAAATGGTAACATTTTTACATCAGAAAAATCTTTCCGAAAGACCTCCGATGGCTGTA
CAAATATTTATGAAACATTCTGCCATAAATATATTTGGTTTAATTGTTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4116#1      AATGAACAGAGTGTTTTAATGCATAGAACTGTCATAATTCTGATTTCATATTTACTAATT 60
consensus_4116#2      ------------------------------------------------------------
consensus_4116#0      -------GAGCCAGTATNTGGCACGAGCGGGTCATAATTCTGATTTCATATTTACTAATT 53
                                                                                  

consensus_4116#1      TATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTT 120
consensus_4116#2      --------------------------------TATTCAAGTATTTGGACGAAAGAAAGTT 28
consensus_4116#0      TATATCGAATGCGTTAAAATAGGATCATTCAATATTCAAGTATTTGGACGAAAGAAAGTT 113
                                                      ****************************

consensus_4116#1      TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 180
consensus_4116#2      TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 88
consensus_4116#0      TCTCAAAAAGATGTTTTGAAGGTATTAGTTCAGATTCTATCTAGATATGATTTAGTTGTT 173
                      ************************************************************

consensus_4116#1      ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 240
consensus_4116#2      ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 148
consensus_4116#0      ATTCAAGAAATTCGTGATGCCAGAGACACTTCATTCAAACACCTCGTCAATGAACTAAAT 233
                      ************************************************************

consensus_4116#1      GA-----------------------------------------------ATATGCGGGTG 253
consensus_4116#2      GAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTG 208
consensus_4116#0      GAGTTAATGCTAAAATTATTCAATATGGACTTAAACTGCGTATTTTTAGATATGCGGGTG 293
                      **                                               ***********

consensus_4116#1      GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 313
consensus_4116#2      GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 268
consensus_4116#0      GTATTTACAAATCGATATTGAGTGAAAAACTGGGTAGGACTCGTTCAAAAGAACAATATG 353
                      ************************************************************

consensus_4116#1      GATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAAC-ATTTTTACAT--- 369
consensus_4116#2      GATTAATTTACAGGCCTACTCTATTTACTATTGGAGAAATGGTAAC-ATTTTTACAT--- 324
consensus_4116#0      GATTAATTTACAGAATCTTATTATTCTAGGTGATATGAATGCTGATTGTGGTTACCTGTC 413
                      *************        ****     *   *  **** * *   *  **** *   

consensus_4116#1      CAGAAAAATCTTTTCGAAAGACCTCCGATGGCTG--TACAAATATTTATGAAACATTCTG 427
consensus_4116#2      CAGAAAAATCTTTCCGAAAGACCTCCGATGGCTG--TACAAATATTTATGAAACATTCTG 382
consensus_4116#0      CAAAAAGAAAATGTCACAACTTCATTTACGAAAGGATACAGAGTTCACTTGGGCTATTCC 473
                      ** *** *   *  *  **   *    * *   *  **** *  *   *    *  *   

consensus_4116#1      CCATAAATATATTTG--------------------------------------------- 442
consensus_4116#2      CCATAAATATATTTGGTTTAATTGTTATA------------------------------- 411
consensus_4116#0      TGATAAACATGATACAACTTTAGGTAAAGGTGATTGTGCATATGACAGAATAATTATACA 533
                        ***** **  *                                               

consensus_4116#1      ------------------------------------------------------------
consensus_4116#2      ------------------------------------------------------------
consensus_4116#0      TGGTAAACAATTAAAACAAGCAATTAAACCAGGAAGCACAAAAGCTTATCAATTTCCAAT 593
                                                                                  

consensus_4116#1      ------------------------------------------------------------
consensus_4116#2      ------------------------------------------------------------
consensus_4116#0      TGAATTAAATATTAGTAATCAATTGGCCAAACAAGTCAGTGATCATTATCCAATAGAAAT 653
                                                                                  

consensus_4116#1      ------------------------------------------------------------
consensus_4116#2      ------------------------------------------------------------
consensus_4116#0      GGAGATTAATTAAACCTATCATTTTATTCTATATACTCAAAGATGTTGAAAATATACTTG 713
                                                                                  

consensus_4116#1      ----------------------------------
consensus_4116#2      ----------------------------------
consensus_4116#0      TATATGATATGTTTAAGCCTAATTAATATATTCT 747