cluster # 4140

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Schistosoma mansoni
cluster # 4140 cluster # 4140 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4140#0 length = 416 sequences # 2

consensus_4140#1 length = 382 sequences # 1

consensusID : consensus_4140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence

                              [TCATATTTAGCGCTAAAAGACACTTTTCTGCACTTCCAACTAGCGTGGACTTCGGTAAAGATGTCTTTATTTGTTCTGAATCACATTGCTTATTTTGAGGCGGTGATTTAAAAGTAAAATATGATGGGGGCCACCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCAACTAAGATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTGCAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGATATTGTCGACAATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGACCA]

[+] EMBL CD202793             [TCATATTTAGCGCTAAAAGACACTTTTCTGCACTTCCAACTAGCGTGGACTTCGGTAAAGATGTCTTTATTTGTTCTGAATCACATTGCTTATTTTGAGGCGGTGATTTAAAAGTAAAATATGATGGGGGCCACCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCA                                                                                                                                                                                                                     ]
[+] EMBL CD065847             [                                                                                                                     tgTATGATGCCGGCCGCCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCAACTAAGATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTGCAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGATATTGTCGACAATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGACCA]




>consensus_4140#0
TCATATTTAGCGCTAAAAGACACTTTTCTGCACTTCCAACTAGCGTGGACTTCGGTAAAG
ATGTCTTTATTTGTTCTGAATCACATTGCTTATTTTGAGGCGGTGATTTAAAAGTAAAAT
ATGATGGGGGCCACCAAGTATCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTATTAG
CTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCAACTA
AGATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTGCAATC
CAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGATATTGTCGACAATAGATT
CCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGACCA

consensusID : consensus_4140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCAGTGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACTGTGCTTAAAATGGTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTCTGGACAAAGTAACAACACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCAGCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGCTCAACAGGAGCGTCTGTTAGCGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACAAATGCTTCTCGCTAACACCGTTGGTTTG]

[+] EMBL CD192961             [TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCAGTGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACTGTGCTTAAAATGGTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTCTGGACAAAGTAACAACACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCAGCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGCTCAACAGGAGCGTCTGTTAGCGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACAAATGCTTCTCGCTAACACCGTTGGTTTG]




>consensus_4140#1
TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCA
GTGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACTGTGCTTAAAAT
GGTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTCTGG
ACAAAGTAACAACACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCAGCTCG
TGCTGCCGCAACCACCCAAACGGTTTCCACTAGCTCAACAGGAGCGTCTGTTAGCGGTCC
CGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACAAATGCT
TCTCGCTAACACCGTTGGTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4140#0      TCATATTTAGCGCTAAAAGACACTTTT-CTGCACTTCCAACTAGCGTGGACTTCGGTAAA 59
consensus_4140#1      TGATTCAGAACAAATAAAGACATCTTTACCGAAGTCCACGCTAGTTGGAAGTGCAGCTCA 60
                      * **    * *    *******  *** * * * * *   ****   * * * * *   *

consensus_4140#0      GATGTCTTTATTTGTTCTGAATCACA-TTGCTTATTTTGAGGCGGTGATTTAAAAGTAAA 118
consensus_4140#1      G-TGTCTTTTAGCTCTCGCTATGATACTTGCTGGCTCTGGCAATCTGACT-GTGCTTAAA 118
                      * *******      **   ** * * *****   * **      *** *      ****

consensus_4140#0      ATATGATGGGGGCCACCAAGTA--TCGTTTAAAAAACTTCTTGCGAGCGAGTATAATGTA 176
consensus_4140#1      ATG-GTTCGACAACTTCGAGCAATTCATTTATTCAATTCAAAACCGGATACTTTGAATTC 177
                      **  * * *    *  * ** *  ** ****   ** *     *  *  * * * *  * 

consensus_4140#0      TTAGCTGCATTTGAATTCGATGTCCCAGCATAACGTAAACCCATAGCTAAAGCACATCCA 236
consensus_4140#1      TGGACAAAGTAACAA--CACTGCATCAGACTCACTCTATCATACTGTTACAGCCGCCGCA 235
                      *   *    *   **  *  **   ***  * **   * *  *  * ** ***     **

consensus_4140#0      ACTAA-GATGTTTAAATAAGCCAAACTTATGGCTTCAACATCCACTGAATCTTTATTGTG 295
consensus_4140#1      GCTCGTGCTGCCGCAACCACCCAAACGGTTTCCACTAGC-TCAACAGGAGCGTCTGTTAG 294
                       **   * **    **  * ******   *  *   * * ** ** * * * *   *  *

consensus_4140#0      CAATCCAAATTGATCGAAGCACTCATTTTTTTCGGGAACTGCTTTGA--TATTGTCGACA 353
consensus_4140#1      CGGTCCCGTATCTGTGGCGTCGGTATTTGGTGCTGCGCTTGGTCCGAGTTATGGATTACA 354
                      *  ***    *    *  *     ****  * * *    ** *  **  *** *   ***

consensus_4140#0      ATAGATTCCTCTTCAGACCATTGTCTTATATCATATCTCCTTGAACGTCGAACAGGTCGA 413
consensus_4140#1      AATGCTTCTCGCTAACACCGTTGGTTTG-------------------------------- 382
                      *  * ***    * * *** ***  **                                 

consensus_4140#0      CCA 416
consensus_4140#1      ---