cluster # 4160

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Schistosoma mansoni
cluster # 4160 cluster # 4160 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4160#0 length = 605 sequences # 1

consensus_4160#1 length = 523 sequences # 1
consensus_4160#2 length = 505 sequences # 1

consensusID : consensus_4160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [TTTCAGAACTAATCAATGCAACCTTGAAAACCTTTAAAGCGAGTGGTGATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCTCGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGTTTAAAATATAATTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAAGTGGATAAATTCTTTGATCGACAAAATGCTAATCACCTGGTAATGTCAAAGAGACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAACGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGCACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCANACGCGTCATATGGAGT]

[+] EMBL CD079163             [TTTCAGAACTAATCAATGCAACCTTGAAAACCTTTAAAGCGAGTGGTGATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCTCGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGTTTAAAATATAATTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAAGTGGATAAATTCTTTGATCGACAAAATGCTAATCACCTGGTAATGTCAAAGAGACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAACGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGCACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCANACGCGTCATATGGAGT]




>consensus_4160#0
TTTCAGAACTAATCAATGCAACCTTGAAAACCTTTAAAGCGAGTGGTGATCCTGTTGTTG
GTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCTCGTTAGAATATG
ATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGTTTAAAATATAAT
TCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAAGTGGATAAATTCTTTGA
TCGACAAAATGCTAATCACCTGGTAATGTCAAAGAGACATGACCTAGACGAGGAGAAATT
GAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAACGCTCTTCGAGCTAAACGAAGTGT
TTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTA
CATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATGTGGAATTCCGAATGACATA
TAATTCAATGAATAATGCAGTCATTGATGTCATTGCACTTTCAATGACGGATTTCCTGGT
GTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCANACGCGTCATAT
GGAGT

consensusID : consensus_4160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTGTGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTTCCACTGCTTTTCAACAACAATTTGGCCTATGATGCAAACTACGGAGTTTTCATTTTACGAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCATTTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCACACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTAATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAACGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG]

[+] EMBL BF936483             [TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTGTGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTTCCACTGCTTTTCAACAACAATTTGGCCTATGATGCAAACTACGGAGTTTTCATTTTACGAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCATTTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCACACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTAATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAACGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG]




>consensus_4160#1
TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTG
TGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTT
CCACTGCTTTTCAACAACAATTTGGCCTATGATGCAAACTACGGAGTTTTCATTTTACGA
ACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCATTT
TGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCACAC
CGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTAAT
AGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAACG
CTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCAAT
TTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG

consensusID : consensus_4160#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [ATTTGCACAATTAATCAATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAAATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAGATAATTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAAGTGGATAAATTCTTTGATCAACAAAATGCTAGTTTCCTGGCAATGTCGAAGAGACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAACTTTGCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCAATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGCACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCAAACGCGTCAT]

[-] EMBL CD066172             [ATTTGCACAATTAATCAATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAAATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAGATAATTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAAGTGGATAAATTCTTTGATCAACAAAATGCTAGTTTCCTGGCAATGTCGAAGAGACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAACTTTGCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCAATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGCTGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGCACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTATGAATTAATGCAAACGCGTCAT]




>consensus_4160#2
ATTTGCACAATTAATCAATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAAATCCTGTTGT
TGGCGTGCATATCAGACGTACTGATAAGATAATTTACGAGGCTAAGTTTCACAACTTATC
AGAGTATATGAAACAAGTGGATAAATTCTTTGATCAACAAAATGCTAGTTTCCTGGCAAT
GTCGAAGAGACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAG
AAAAAATAACTTTGCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTAC
TCAATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTC
AGCTGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCAT
TGCACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGC
CTATGAATTAATGCAAACGCGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4160#0      ------------------------------------------------------------
consensus_4160#2      ------------------------------------------------------------
consensus_4160#1      TATGCCCATCTTAGCGGTCGTCAAATTTACTCAGTGTATTCTTTAAGGGAGTTATTGGTG 60
                                                                                  

consensus_4160#0      -----------TTTCAGAACTAATCA-ATGCAACCTTGAAAACCTTTAAAGCGAGTGGTG 48
consensus_4160#2      ---------ATTTGCACAATTAATCA-ATGCAACCTTGAAGAGCTTTAAAGCGAGTGGAA 50
consensus_4160#1      TGGATTGCAATATACTCCTTTAATAGGACGAAATATGTGCCCCCCATACATCCACGTTTT 120
                                  * *     ****   * * **  *       *  ** * * *      

consensus_4160#0      ATCCTGTTGTTGGTGTGCATATCAGACGTACTGACAAGGTTGGTGTTTGTTCATATACCT 108
consensus_4160#2      ATCCTGTTGTTGGCGTGCATATCAGACGTACTGATAAG---------------------- 88
consensus_4160#1      CCACTGCTTTTCAACAACA-ATTTGGCCTA-TGATGCAAACTACGGAGTTTTCATTTTAC 178
                         *** * **      ** **  * * ** ***                          

consensus_4160#0      CGTTAGAATATGATATGATGCACTTTATTGTTTATTGCTCAAAATCCGGACAGTGCATGT 168
consensus_4160#2      ------------------------------------------------------------
consensus_4160#1      GAACAACTTACATCAAGTTCACTCTTAAGAATTCTTTTTGAATGAGTAGAAACTGCGCAT 238
                                                                                  

consensus_4160#0      TTAAAATATAA-----TTCTGGAGGCTAAGTTTCACAACTTATCAGAGTACATGGAGCAA 223
consensus_4160#2      -------ATAA-----TTTACGAGGCTAAGTTTCACAACTTATCAGAGTATATGAAACAA 136
consensus_4160#1      TTTGAGAACAAAAATGTTTCTCATGTTATATTATACATAATTTTATCACGTCGAATTCAC 298
                             * **     **    * * **  **  ***   * * *            ** 

consensus_4160#0      GTGGATAAATTCTTTG--ATCGA----CAAAATGCTAATCACCTGGTAATGTC-AAAGAG 276
consensus_4160#2      GTGGATAAATTCTTTG--ATCAA----CAAAATGCTAGTTTCCTGGCAATGTC-GAAGAG 189
consensus_4160#1      ACCGACCACTTTATCATTATCAATATACATAATGAATCTGCTTTGACATTTTCCAAACTA 358
                         **  * **  *    *** *    ** ****    *    **  * * **  **   

consensus_4160#0      ACATGACCTAGACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGCATTGGAAGAAAAAA 336
consensus_4160#2      ACATGACATAGAAGAGAAGAAATTTGGATCGATTTTTGGAAGAACTATTAGAAAAAATAA 249
consensus_4160#1      ATAGGACCTAAACGAGGAGAAATTGAGGTCGATTTCTGAAAAAAGAATTGGAAGAAAAAA 418
                      * * *** ** * *** *******  * ******* ** ** **  *** *** *** **

consensus_4160#0      CGCTCTTCGAGCTAAACGAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCA 396
consensus_4160#2      CTTT------GCTAAACGAAGTGTTTATTTGGCCACAGATGATCCGAATGTTTTTACTCA 303
consensus_4160#1      CGCTCTTCGAGCTAAACTAAGTGTTTATTTGGCGACAGATGATCCGAATGTTTTTACTCA 478
                      *  *      ******* *************** **************************

consensus_4160#0      ATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGGTAGATCCCATTCAGC 456
consensus_4160#2      ATTCCCATACAGTCATCCTAAATACATTTTGTATGGTAGTCCAGGTAGATCCCATTCAGC 363
consensus_4160#1      ATTTTCGTACAGCCATCCCAACTACATTCTGTATGGTAGTCCAGG--------------- 523
                      ***  * ***** ***** ** ****** ****************               

consensus_4160#0      TGATGTGGAATTCCGAATGACATATAATTCAATGAATAATGCAGTCATTGATGTCATTGC 516
consensus_4160#2      TGATTTGAGGATGCGGAAGACATATAATTCAATAAATAATGCAATCATTGACGTCATTGC 423
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      ACTTTCAATGACGGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTA 576
consensus_4160#2      ACTTTCAATGACAGATTTCCTGGTGTGTACATTTTCATCGAATATTTGTCGTTTAGCCTA 483
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      TGAATTAATGCANACGCGTCATATGGAGT 605
consensus_4160#2      TGAATTAATGCAAACGCGTCAT------- 505
consensus_4160#1      -----------------------------