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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATATTTCCTGAAGTATATTTTTCGGATGATGTTCTCTAGACGCGTAAATAAGACGAATGAGAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGAGACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGATAACTGTTGAGGA]
[+] EMBL CD150491 [TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATATTTCCTGAAGTATATTTTTCGGATGATGTTCTCTAGACGCGTAAATAAGACGAATGAGAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGAGACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGATAACTGTTGAGGA]
consensusID : consensus_4174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[AGATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGGACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTCTATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAAGTATATTTTTCGGATGAA]
[+] EMBL CD168351 [AGATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGGACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTCTATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAAGTATATTTTTCGGATGAA]
consensusID : consensus_4174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTAAGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA]
[+] EMBL CD189064 [AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTAAGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4174#0 ------------------------------------------------------------
consensus_4174#1 -----------------------------------------------------------A 1
consensus_4174#2 AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTA 60
consensus_4174#0 ----------------------TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGG 38
consensus_4174#1 GATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGG 61
consensus_4174#2 AGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGG 120
* * * ******************** ****
consensus_4174#0 ACATCGATGATG----------------------------------AAATTTTGGAACTG 64
consensus_4174#1 ACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTG 121
consensus_4174#2 ACATCGATGATG----------------------------------AAATTTTGGAACTG 146
******* **** **************
consensus_4174#0 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTC 124
consensus_4174#1 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTC 181
consensus_4174#2 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTC 206
********************************************* **************
consensus_4174#0 TACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGA 184
consensus_4174#1 TACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGA 241
consensus_4174#2 TACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA--- 263
*************************** *****************************
consensus_4174#0 ACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATAT 244
consensus_4174#1 ACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTC 301
consensus_4174#2 ------------------------------------------------------------
consensus_4174#0 TTCCTGAAGTATATT---TTTCGGATG-ATGTTCTCTAGACGCGTAAATAAGACGAATGA 300
consensus_4174#1 TATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAA---GTATATTTTTCGGATGA 358
consensus_4174#2 ------------------------------------------------------------
consensus_4174#0 GAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGA 360
consensus_4174#1 A----------------------------------------------------------- 359
consensus_4174#2 ------------------------------------------------------------
consensus_4174#0 GACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGAT 420
consensus_4174#1 ------------------------------------------------------------
consensus_4174#2 ------------------------------------------------------------
consensus_4174#0 AACTGTTGAGGA 432
consensus_4174#1 ------------
consensus_4174#2 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||