cluster # 4190

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Schistosoma mansoni
cluster # 4190 cluster # 4190 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4190#0 length = 519 sequences # 1

consensus_4190#1 length = 405 sequences # 2

consensusID : consensus_4190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGGATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTCAGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCAAGGTTATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATCAAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTAGTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAGACTTCAATCAGAATCCTTTGGTCGATGCAAAAGTTTTCCTGTTATGTGATAAAGATAAGACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATATTCATATATAGTCGAAACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC]

[+] EMBL CD201355             [TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGGATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTCAGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCAAGGTTATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATCAAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTAGTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAGACTTCAATCAGAATCCTTTGGTCGATGCAAAAGTTTTCCTGTTATGTGATAAAGATAAGACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATATTCATATATAGTCGAAACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC]




>consensus_4190#0
TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGG
ATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTC
AGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCA
AGGTTATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATCA
AGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTAG
TATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAGA
CTTCAATCAGAATCCTTTGGTCGATGCAAAAGTTTTCCTGTTATGTGATAAAGATAAGAC
ATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATATTCATATATAGTCGAAACACT
TGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC

consensusID : consensus_4190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 405
fasta sequence

                              [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTAATTAAAATAATGAAAGTATAACAAGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCGCAATTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGTGATAATGTCTAATCTACTACCAACTAAATAGGCTGAAAAAGAGTTCATAGCAGTTAAAACTCCATGCAAGATGAA]

[+] EMBL CD066338             [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTAATTAAAATAATGAAAGTATAACAAGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCGCAATTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGTGATAATGTCTAATCTACTACCAACTAAATAGGCTGAAAAAGAGTTCATAGCAGTTAAAACTCCATGCAAGATGAA]
[+] EMBL CD067213             [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTATTTAAAATAATGAAGGTtt                                                                                                                                                                                       ]




>consensus_4190#1
CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAG
TATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTT
GTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATAC
CATAATTTTCAAGAGGAAAATTAATTAAAATAATGAAAGTATAACAAGACTGTGATACGT
CTCCAAACTCCTAATTATATACTTCCGCAATTGTTAAACACTATCTTCCCATCAATAAGT
AATGTTAAAAGGACAGGCATATTTAATCGTGATAATGTCTAATCTACTACCAACTAAATA
GGCTGAAAAAGAGTTCATAGCAGTTAAAACTCCATGCAAGATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4190#0      TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGG 60
consensus_4190#1      ------------------------------------------------------------
                                                                                  

consensus_4190#0      ATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTC 120
consensus_4190#1      ---------CATCGACCAAAGGA----TTCTG-ATTGAAGTCTGTCACACGTCCGCGGAG 46
                                 ***  **    *    ***** * ****  * *   *** *     *  

consensus_4190#0      AGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCA 180
consensus_4190#1      AAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACG 106
                      *    **      *     *      *** *  **** ** * * *  **   *  * * 

consensus_4190#0      AGGTT-ATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATC 239
consensus_4190#1      ATGTTCATGGGTTTGTTTCATTTTTGATGTT--ATATCCAACAAATGATTGATACTAAAT 164
                      * *** **    *  * **   * *** *     ** * *   * ***  *  *  **  

consensus_4190#0      AAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTA 299
consensus_4190#1      AAGAT----GTATTTAATACCATA-------ATTT-TCAAGAGGAAAATTAATTAAAATA 212
                      *****    **  * ** * ****       ** * **** *  * ***  * *    **

consensus_4190#0      GTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAG 359
consensus_4190#1      ATGAAAGTATAACA-AGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCG-CAA 270
                       *   *   *  ** *  *  * **    **      *  *        ** *  * ** 

consensus_4190#0      ACTTCAATCAGAATCCTTTGGTCGATGCAAAA-GTTTTCCTGTTATGTG-ATAAAGATAA 417
consensus_4190#1      TTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGT 330
                         * ** **  *** *    ** **    ** ***     *  * *   **  *     

consensus_4190#0      GACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATA---TTCATATATAGTCGA 474
consensus_4190#1      GATAATGTCTAA-TCTACTACCAACT-AAATAGGCTGAAAAAGAGTTCATA-GCAGTTAA 387
                      ** * * ** ** **  ******  * * * * **    * *   ******   ***  *

consensus_4190#0      AACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC 519
consensus_4190#1      AACTCCATGCAAGATGAA--------------------------- 405
                      *** *   *  * **  *