cluster # 4194

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Schistosoma mansoni
cluster # 4194 cluster # 4194 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4194#0 length = 390 sequences # 2

consensus_4194#1 length = 102 sequences # 1

consensusID : consensus_4194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 390
fasta sequence

                              [GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGAGAAACCCTGTAAACTACAC]

[-] EMBL CD185004             [GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAG                                                                          ]
[+] EMBL CD059576             [                                                         GGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGAGAAACCCTGTAAACTACAC]




>consensus_4194#0
GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGA
CGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCG
ATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTT
AAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATT
GTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTC
GCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAA
GGATACTGGGAGAAACCCTGTAAACTACAC

consensusID : consensus_4194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC]

[+] EMBL CD064343             [ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC]




>consensus_4194#1
ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACA
CACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4194#0      GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGA 60
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      CGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCG 120
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      ATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTT 180
consensus_4194#1      --------ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACAT 52
                                   **** **     * ***  ** * * *** * *   *****  ** *

consensus_4194#0      AAAATCATGCCAGTTCAAAAGCAGACTTGTGCTG-GCCAGAGAACCCGCTTTAAAGCAAT 239
consensus_4194#1      CACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC---------- 102
                       *  *     ****  * *** *   *   **** *  * *  * **             

consensus_4194#0      TGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGT 299
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      CGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAA 359
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      AGGATACTGGGAGAAACCCTGTAAACTACAC 390
consensus_4194#1      -------------------------------