cluster # 4236

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Schistosoma mansoni
cluster # 4236 cluster # 4236 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4236#0 length = 706 sequences # 1

consensus_4236#1 length = 697 sequences # 1
consensus_4236#2 length = 119 sequences # 1

consensusID : consensus_4236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [TCGGCACGAGGCCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTACCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTTCGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATTTGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATTAATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACAATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTAATGAATTAAATTGTTCCATCGAATGG]

[+] EMBL CD081277             [TCGGCACGAGGCCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTACCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTTCGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATTTGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATTAATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACAATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTAATGAATTAAATTGTTCCATCGAATGG]




>consensus_4236#0
TCGGCACGAGGCCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACA
AACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTG
TAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAAT
CACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTC
TTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAA
TTCTACTTATCAGTAGTCAAGCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTC
ACGTTCAAACCTTGGGGTTACCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTT
GAAACCACCAACTTGGATTTCGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAA
TTATTCTCGCAGGTGCCATTTGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAA
AAGCGAAAATTGTTGTAATTAATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATT
TTTGGAGACCATATCTAACAATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGC
TTCACTACANAATGGTACTAATGAATTAAATTGTTCCATCGAATGG

consensusID : consensus_4236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTGCTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTGGTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCCTTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACCAGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGATTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGATACACCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA]

[+] EMBL CD082199             [GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTGCTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTGGTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCCTTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACCAGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGATTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGATACACCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA]




>consensus_4236#1
GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTG
CTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTG
GTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCC
TTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACC
AGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGA
TTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGATACACCTGGACCAGTTT
TAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGT
TGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATC
TTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTT
CAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGA
AATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTG
TTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA

consensusID : consensus_4236#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [AGGACTACAGGAGATTCAGCCATCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTTATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT]

[+] EMBL CD170292             [AGGACTACAGGAGATTCAGCCATCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTTATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT]




>consensus_4236#2
AGGACTACAGGAGATTCAGCCATCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGA
CCAGGACTTTATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4236#0      ------------------------------------------------------------
consensus_4236#1      GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTG 60
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ------------------------------------------------------------
consensus_4236#1      CTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTG 120
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ------------------------------------------------------------
consensus_4236#1      GTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCC 180
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ------------------------------------------------------------
consensus_4236#1      TTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACC 240
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ------------------------------------------------------------
consensus_4236#1      AGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGA 300
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      --------------------------------------TCGGCACGAGGCCTGGACCAGT 22
consensus_4236#1      TTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGAT--ACACCTGGACCAGT 358
consensus_4236#2      ----------------------------------------------AGGACTACAGGAGA 14
                                                                    *   **  *  ** 

consensus_4236#0      TTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAA-ACTGGTTGAAC-AGCATACT 80
consensus_4236#1      TTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAA-ACTGGTTGAAC-AGCATACT 416
consensus_4236#2      TTCAGCCA----TCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTT 70
                      ** **       ** ** *   ** *  *      **   * * **   ** ** *   *

consensus_4236#0      AAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTC 140
consensus_4236#1      AAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTC 476
consensus_4236#2      ATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT----------- 119
                      *    ** * *  *** * **  ***   *       *  * *** * *           

consensus_4236#0      TATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAAC 200
consensus_4236#1      TATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAAC 536
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      GGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTG 260
consensus_4236#1      GGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTG 596
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      AAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAA 320
consensus_4236#1      AAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAA 656
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      GCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTA 380
consensus_4236#1      GCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA------------------- 697
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      CCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTT 440
consensus_4236#1      ------------------------------------------------------------
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      CGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATT 500
consensus_4236#1      ------------------------------------------------------------
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      TGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATT 560
consensus_4236#1      ------------------------------------------------------------
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      AATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACA 620
consensus_4236#1      ------------------------------------------------------------
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTA 680
consensus_4236#1      ------------------------------------------------------------
consensus_4236#2      ------------------------------------------------------------
                                                                                  

consensus_4236#0      ATGAATTAAATTGTTCCATCGAATGG 706
consensus_4236#1      --------------------------
consensus_4236#2      --------------------------