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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence
[CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA-TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA]
[+] EMBL CD081233 [CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA TAATTATGATCAT ]
[-] EMBL CD075064 [ AGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAAAAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAATTAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA]
consensusID : consensus_4251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA]
[+] EMBL CD077392 [CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4251#0 CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTG 60
consensus_4251#1 -------------------------CCGAGGCAAGAATCGGCACGA--------GGCGTG 27
** * ** ** * * * * ****
consensus_4251#0 ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 120
consensus_4251#1 ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 87
************************************************************
consensus_4251#0 ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 180
consensus_4251#1 ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 147
************************************************************
consensus_4251#0 TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 240
consensus_4251#1 TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 207
************************************************************
consensus_4251#0 AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 300
consensus_4251#1 AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 267
************************************************************
consensus_4251#0 GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 360
consensus_4251#1 GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 327
************************************************************
consensus_4251#0 CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 420
consensus_4251#1 CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 387
************************************************************
consensus_4251#0 CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 480
consensus_4251#1 CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 447
************************************************************
consensus_4251#0 ATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCAT 540
consensus_4251#1 ATATTGAATTAGCACGTGATCTAGTACGATCA---------------------------- 479
************************* ******
consensus_4251#0 CTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACAN 600
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 ATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTG 660
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 ATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA 720
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTAT 780
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGA 840
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACT 900
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 ACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGG 960
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGG 1020
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 TTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACC 1080
consensus_4251#1 ------------------------------------------------------------
consensus_4251#0 CTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA 1132
consensus_4251#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||