cluster # 4261

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Schistosoma mansoni
cluster # 4261 cluster # 4261 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4261#0 length = 813 sequences # 2

consensus_4261#1 length = 370 sequences # 1

consensusID : consensus_4261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 813
fasta sequence

                              [AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTCCAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGTAGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATATGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAGGATGAAGGTCA-GTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAATTTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAGTCATGCGGACCCCAACCAAGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAATGACTTCAAGGACTGATGCCATGTTTTGGTTTGGCCGCCTTTAACTCTCTTCCAACCATCCCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTGGCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTTATAGATAATGAAAATACATTGAGAAAATATGAAATC]

[-] EMBL CD129707             [AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTCCAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGTAGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATATGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAGGATGAAGGTCA GTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD156367             [                                                                                                                                                                                                                                                    ctttTCATGTGTATCAGTCAGTCACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAATTTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAGTCATGCGGACCCCAACCAAGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAATGACTTCAAGGACTGATGCCATGTTTTGGTTTGGCCGCCTTTAACTCTCTTCCAACCATCCCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTGGCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTTATAGATAATGAAAATACATTGAGAAAATATGAAATC]




>consensus_4261#0
AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTC
CAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGT
AGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATA
TGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAG
GATGAAGGTCAGTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTC
CAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAAT
TTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGA
CAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTAC
ACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAGT
CATGCGGACCCCAACCAAGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAATGA
CTTCAAGGACTGATGCCATGTTTTGGTTTGGCCGCCTTTAACTCTCTTCCAACCATCCCC
AATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTGGCC
AAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTTATA
GATAATGAAAATACATTGAGAAAATATGAAATC

consensusID : consensus_4261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [GTCTACCCGGCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCATATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCGCCGGTGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAA]

[+] EMBL CD146225             [GTCTACCCGGCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCATATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCGCCGGTGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAA]




>consensus_4261#1
GTCTACCCGGCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGT
GCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCATATAGCTTTCGAGA
CGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTCTTT
CAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATC
CTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGAT
GTCTTGCGCCGGTGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCT
GCGTGAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4261#0      AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTC 60
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      CAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGT 120
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      AGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATA 180
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      TGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAG 240
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      GATGAAGGTCAGTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTC 300
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      CAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAAT 360
consensus_4261#1      ------------------------------------------------------------
                                                                                  

consensus_4261#0      TTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGA 420
consensus_4261#1      ---------------------------------------------GTCTACCCGGCATAG 15
                                                                   ** **    * *   

consensus_4261#0      CAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAG-ATAAAGAGTGTATACACCTA 479
consensus_4261#1      TCGGAACGCAGGCCCCTTA----TATGGTCAACCACAAACACCAACAGTGCTTTCGTCTT 71
                         * * * **     ***    ** ***  *    **  *  ** ****  * *  ** 

consensus_4261#0      CACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAG 539
consensus_4261#1      GGTCAC-GTCATT--CTCCAAGTCAC--TGGTCACAGTCATATAGCTTTCGAGACGACGC 126
                         **  ** *     **  *  **        * ***     * * ** *  ****   

consensus_4261#0      TCATGCGGACCCCAACCA-AGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAAT 598
consensus_4261#1      TTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTC---TTTCAG 183
                      *   ***   * **  ** **   * *    *    ** ** **** * *     ** * 

consensus_4261#0      GACTTCAAGGACTGATGCCATGTTTTG-GTTTGGCCGCCTTTAACTCTCTTCCAACCATC 657
consensus_4261#1      TTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTC 243
                          ***  ***     ***  *     * ***     *     * * ** * ** * **

consensus_4261#0      CCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTG 717
consensus_4261#1      TCG-----TAACCCGTCTGATGTGCAACGGT---CAGTCGACAAGCCTTCATG-TGCATA 294
                       *      **  * *  *   * *    ***   ***    ***** * * *  * * * 

consensus_4261#0      GCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTT 777
consensus_4261#1      GTCGA-TGTCTTGCGCCGGTGACGTTTA-------TGACCTA-GTGTCGTCTCTGCAGGT 345
                      * * * *    **   *  * **    *       *** ***    * ** *   *** *

consensus_4261#0      ATAGATAATGAAAATACATTGAGAAAATATGAAATC 813
consensus_4261#1      CGAGGTTGCCCATCTGCGTGAGGAA----------- 370
                        ** *     *  * * *   ***